In silico work flow for scaffold hopping in Leishmania (Q34584775)

3 August 2017

title

In silico work flow for scaffold hopping in Leishmania (English)

1 reference

3 August 2017

1 reference

Barnali Waugh

1

1 reference

3 August 2017

Ambarnil Ghosh

2

1 reference

3 August 2017

Dhananjay Bhattacharyya

3

1 reference

3 August 2017

Nanda Ghoshal

4

1 reference

3 August 2017

Rahul Banerjee

5

1 reference

3 August 2017

publication date

17 November 2014

1 reference

3 August 2017

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3 August 2017

volume

7

1 reference

3 August 2017

page(s)

802

1 reference

Endosymbiosis in trypanosomatids: the genomic cooperation between bacterium and host in the synthesis of essential amino acids is heavily influenced by multiple horizontal gene transfers.

3 August 2017

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7 July 2018

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7 July 2018

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Proteinases as virulence factors in Leishmania spp. infection in mammals.

7 July 2018

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7 July 2018

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Adenine aminohydrolase from Leishmania donovani: unique enzyme in parasite purine metabolism

7 July 2018

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Antimony resistance in leishmania, focusing on experimental research

7 July 2018

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7 July 2018

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Dihydroquinazolines as a Novel Class of Trypanosoma brucei Trypanothione Reductase Inhibitors: Discovery, Synthesis, and Characterization of their Binding Mode by Protein Crystallography

7 July 2018

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Biosynthesis of Galactofuranose in Kinetoplastids: Novel Therapeutic Targets for Treating Leishmaniasis and Chagas' Disease

7 July 2018

1 reference

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The Leishmania donovani UMP Synthase Is Essential for Promastigote Viability and Has an Unusual Tetrameric Structure That Exhibits Substrate-controlled Oligomerization

7 July 2018

1 reference

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The Crystal Structure of the Leishmania major Deoxyuridine Triphosphate Nucleotidohydrolase in Complex with Nucleotide Analogues, dUMP, and Deoxyuridine

7 July 2018

1 reference

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Targeting Trypanothione Metabolism in Trypanosomatid Human Parasites

7 July 2018

1 reference

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EasyModeller: A graphical interface to MODELLER

7 July 2018

1 reference

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Dali server: conservation mapping in 3D

7 July 2018

1 reference

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Deletion of UDP-glucose pyrophosphorylase reveals a UDP-glucose independent UDP-galactose salvage pathway in Leishmania major

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247209

Conformer generation with OMEGA: algorithm and validation using high quality structures from the Protein Databank and Cambridge Structural Database

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247209

BLAST : architecture and applications

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247209

Self-organizing maps in drug discovery: compound library design, scaffold-hopping, repurposing

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247209

Genomic-scale prioritization of drug targets: the TDR Targets database

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247209

Insights into the redox biology of Trypanosoma cruzi: Trypanothione metabolism and oxidant detoxification

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247209

Design, synthesis and trypanocidal activity of lead compounds based on inhibitors of parasite glycolysis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247209

Proteomic analysis of the secretome of Leishmania donovani

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247209

The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247209

Comparative genomic analysis of three Leishmania species that cause diverse human disease

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247209

Essential gene identification and drug target prioritization in Aspergillus fumigatus

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247209

Molecular mechanisms of antimony resistance in Leishmania

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247209

Metabolic functions of glycosomes in trypanosomatids

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247209

Identification of novel inhibitors of UDP-Glc 4'-epimerase, a validated drug target for african sleeping sickness.

7 July 2018

1 reference

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Specificity of the trypanothione-dependent Leishmania major glyoxalase I: structure and biochemical comparison with the human enzyme

7 July 2018

1 reference

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Expansion of the BioCyc collection of pathway/genome databases to 160 genomes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247209

The Genome of the African Trypanosome Trypanosoma brucei

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247209

The Genome Sequence of Trypanosoma cruzi, Etiologic Agent of Chagas Disease

7 July 2018

1 reference

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Comparative genomics of trypanosomatid parasitic protozoa

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247209

Leishmaniasis: drugs in the clinic, resistance and new developments.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247209

The crystal structure of Trypanosoma cruzi dUTPase reveals a novel dUTP/dUDP binding fold

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247209

Leishmaniasis--current chemotherapy and recent advances in the search for novel drugs

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247209

OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247209

The Parasite-Specific Trypanothione Metabolism of Trypanosoma and Leishmania

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247209

Pharmacophore modeling as an efficient tool in the discovery of novel noncompetitive AMPA receptor antagonists

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247209

Reversible ligand-induced dissociation of a tryptophan-shift mutant of phosphofructokinase from Bacillus stearothermophilus

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247209

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247209

Visceral leishmaniasis: current status of control, diagnosis, and treatment, and a proposed research and development agenda

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247209

Glycolysis as a target for the design of new anti-trypanosome drugs.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247209

Nucleoside hydrolase from Leishmania major. Cloning, expression, catalytic properties, transition state inhibitors, and the 2.5-å crystal structure

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247209

Identification of Novel Farnesyl Protein Transferase Inhibitors Using Three-Dimensional Database Searching Methods

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247209

Novel biochemical pathways in parasitic protozoa

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247209

The life-cycle of Leishmania in the sandfly with special reference to the form infective to the vertebrate host

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247209

Scaffold hopping in drug discovery using inductive logic programming.

7 July 2018

1 reference

https://api.crossref.org/works/10.1186/1756-0500-7-802

Development of a pharmacophore model for histamine H3 receptor antagonists, using the newly developed molecular modeling program SLATE.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186/1756-0500-7-802

Leishmania donovani phosphofructokinase. Gene characterization, biochemical properties and structure-modeling studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1186/1756-0500-7-802

Genomic and proteomic expression analysis of Leishmania promastigote and amastigote life stages: the Leishmania genome is constitutively expressed.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186/1756-0500-7-802

Structures of Leishmania major pteridine reductase complexes reveal the active site features important for ligand binding and to guide inhibitor design.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186/1756-0500-7-802

On a Cercopithifilaria sp. transmitted by Rhipicephalus sanguineus: a neglected, but widespread filarioid of dogs

21 January 2018

1 reference

https://api.crossref.org/works/10.1186/1756-0500-7-802

Gene synteny and evolution of genome architecture in trypanosomatids

21 January 2018

1 reference

https://api.crossref.org/works/10.1186/1756-0500-7-802

Docking and molecular dynamics studies at trypanothione reductase and glutathione reductase active sites

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247209

The crystal structure of trypanothione reductase from the human pathogen Trypanosoma cruzi at 2.3 A resolution.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4247209

Resistance to antimony and treatment failure in human Leishmania (Viannia) infection

27 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25399834

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

1 reference

https://pubmed.ncbi.nlm.nih.gov/25399834

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1756-0500-7-802

1 reference

Dimensions Publication ID

3 August 2017

0 references

1 reference

3 August 2017

1 reference