Genomic analysis of oceanic cyanobacterial myoviruses compared with T4-like myoviruses from diverse hosts and environments (Q34568097)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20662890 AND SRC:MED&resulttype=core&format=json

8 February 2020

title

Genomic analysis of oceanic cyanobacterial myoviruses compared with T4-like myoviruses from diverse hosts and environments (English)

1 reference

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8 February 2020

1 reference

Julio Cesar Ignacio-Espinoza

3

1 reference

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8 February 2020

Luke R Thompson

9

1 reference

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8 February 2020

Sallie W. Chisholm

18

1 reference

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8 February 2020

author name string

Matthew B Sullivan

1

1 reference

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8 February 2020

Katherine H Huang

2

1 reference

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8 February 2020

Aaron M Berlin

4

1 reference

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8 February 2020

Libusha Kelly

5

1 reference

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8 February 2020

Peter R Weigele

6

1 reference

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8 February 2020

Alicia S DeFrancesco

7

1 reference

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8 February 2020

Suzanne E Kern

8

1 reference

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8 February 2020

Sarah Young

10

1 reference

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8 February 2020

Chandri Yandava

11

1 reference

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8 February 2020

Ross Fu

12

1 reference

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8 February 2020

Bryan Krastins

13

1 reference

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8 February 2020

Michael Chase

14

1 reference

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8 February 2020

David Sarracino

15

1 reference

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8 February 2020

Marcia S Osburne

16

1 reference

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8 February 2020

Matthew R Henn

17

1 reference

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8 February 2020

publication date

1 November 2010

1 reference

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Environmental Microbiology

8 February 2020

published in

1 reference

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8 February 2020

volume

12

1 reference

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8 February 2020

issue

11

1 reference

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8 February 2020

page(s)

3035-3056

1 reference

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describes a project that uses

8 February 2020

Cytoscape

object named as

Cytoscape

2 references

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

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The genome and structural proteome of an ocean siphovirus: a new window into the cyanobacterial 'mobilome'.

7 July 2018

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Photosystem I gene cassettes are present in marine virus genomes

7 July 2018

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Choreography of the transcriptome, photophysiology, and cell cycle of a minimal photoautotroph, prochlorococcus

7 July 2018

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Portal protein diversity and phage ecology.

7 July 2018

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Unraveling the genomic mosaic of a ubiquitous genus of marine cyanobacteria.

7 July 2018

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Evidence for the intense exchange of MazG in marine cyanophages by horizontal gene transfer

7 July 2018

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The global, ppGpp-mediated stringent response to amino acid starvation in Escherichia coli

7 July 2018

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Efficient phage-mediated pigment biosynthesis in oceanic cyanobacteria

7 July 2018

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Crystal Structure of Escherichia coli MazG, the Regulator of Nutritional Stress Response

7 July 2018

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The Sorcerer II Global Ocean Sampling Expedition: metagenomic characterization of viruses within aquatic microbial samples

7 July 2018

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Patterns and implications of gene gain and loss in the evolution of Prochlorococcus

7 July 2018

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Ma-LMM01 infecting toxic Microcystis aeruginosa illuminates diverse cyanophage genome strategies

7 July 2018

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Viral photosynthetic reaction center genes and transcripts in the marine environment

7 July 2018

1 reference

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Integration of biological networks and gene expression data using Cytoscape

7 July 2018

1 reference

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Microbial oceanography: paradigms, processes and promise

7 July 2018

1 reference

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Genome-wide expression dynamics of a marine virus and host reveal features of co-evolution

7 July 2018

1 reference

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Code and context: Prochlorococcus as a model for cross-scale biology

7 July 2018

1 reference

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Computational prediction of Pho regulons in cyanobacteria

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

Marine cyanophages and light

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

The marine viromes of four oceanic regions

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

Bacterial taxa that limit sulfur flux from the ocean.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

Phosphate acquisition genes in Prochlorococcus ecotypes: evidence for genome-wide adaptation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

Plasticity of the gene functions for DNA replication in the T4-like phages

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

Prevalence and evolution of core photosystem II genes in marine cyanobacterial viruses and their hosts

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

Genetic diversity among five T4-like bacteriophages

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

Transcription of a 'photosynthetic' T4-type phage during infection of a marine cyanobacterium

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

Genomic islands and the ecology and evolution of Prochlorococcus.

7 July 2018

1 reference

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Computational inference and experimental validation of the nitrogen assimilation regulatory network in cyanobacterium Synechococcus sp. WH 8102.

7 July 2018

1 reference

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Community genomics among stratified microbial assemblages in the ocean's interior

7 July 2018

1 reference

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MazG -- a regulator of programmed cell death in Escherichia coli

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

House cleaning, a part of good housekeeping

7 July 2018

1 reference

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Isolation and Molecular Characterization of Five Marine Cyanophages Propagated on Synechococcus sp. Strain WH7803

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

Resistance to co-occurring phages enables marine synechococcus communities to coexist with cyanophages abundant in seawater.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

Photosynthesis genes in marine viruses yield proteins during host infection

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

Marine microorganisms and global nutrient cycles

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

Comparative genomics analysis of NtcA regulons in cyanobacteria: regulation of nitrogen assimilation and its coupling to photosynthesis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

Acclimation of unicellular cyanobacteria to macronutrient deficiency: emergence of a complex network of cellular responses

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

ppGpp: a global regulator in Escherichia coli.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

The genome of S-PM2, a "photosynthetic" T4-type bacteriophage that infects marine Synechococcus strains

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

Three Prochlorococcus cyanophage genomes: signature features and ecological interpretations

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

Comparative genomics of the T4-Like Escherichia coli phage JS98: implications for the evolution of T4 phages

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

MUSCLE: a multiple sequence alignment method with reduced time and space complexity

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

Genetic organization of the psbAD region in phages infecting marine Synechococcus strains

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

Transfer of photosynthesis genes to and from Prochlorococcus viruses

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

Ecology of prokaryotic viruses

7 July 2018

1 reference

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Plastid terminal oxidase and its biological significance

7 July 2018

1 reference

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Structure and morphogenesis of bacteriophage T4.

7 July 2018

1 reference

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SegG endonuclease promotes marker exclusion and mediates co-conversion from a distant cleavage site

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

Cyanophages infecting the oceanic cyanobacterium Prochlorococcus

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

Complete genome sequence of the broad-host-range vibriophage KVP40: comparative genomics of a T4-related bacteriophage

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

Marine ecosystems: bacterial photosynthesis genes in a virus

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

Genetic diversity and temporal variation in the cyanophage community infecting marine Synechococcus species in Rhode Island's coastal waters

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

The phosphate starvation stimulon of Corynebacterium glutamicum determined by DNA microarray analyses

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

7 July 2018

Prophage insertion sites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

7 July 2018

Bacteriophage T4 Genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

Genomic analysis of uncultured marine viral communities

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

Snapshot of the genome of the pseudo-T-even bacteriophage RB49.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

Genomic sequence and evolution of marine cyanophage P60: a new insight on lytic and lysogenic phages

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

Integration sites for genetic elements in prokaryotic tRNA and tmRNA genes: sublocation preference of integrase subfamilies

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

Intronless homing: site-specific endonuclease SegF of bacteriophage T4 mediates localized marker exclusion analogous to homing endonucleases of group I introns

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

A conserved genetic module that encodes the major virion components in both the coliphage T4 and the marine cyanophage S-PM2

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

Environmental bacteriophage-host interactions: factors contribution to natural transduction

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

Distribution, isolation, host specificity, and diversity of cyanophages infecting marine Synechococcus spp. in river estuaries

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

Succinate dehydrogenase and other respiratory pathways in thylakoid membranes of Synechocystis sp. strain PCC 6803: capacity comparisons and physiological function

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

Microbial gene transfer: an ecological perspective.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

Virioplankton: Viruses in Aquatic Ecosystems

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

Marine viruses and their biogeochemical and ecological effects

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

Prochlorococcus, a marine photosynthetic prokaryote of global significance

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

Comparative genomics of marine cyanomyoviruses reveals the widespread occurrence of Synechococcus host genes localized to a hyperplastic region: implications for mechanisms of cyanophage evolution.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

A free-standing homing endonuclease targets an intron insertion site in the psbA gene of cyanophages.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

A proteomic approach to the identification of the major virion structural proteins of the marine cyanomyovirus S-PM2.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

Alternative photosynthetic electron flow to oxygen in marine Synechococcus

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

Genomic and structural analysis of Syn9, a cyanophage infecting marine Prochlorococcus and Synechococcus

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

A selective barrier to horizontal gene transfer in the T4-type bacteriophages that has preserved a core genome with the viral replication and structural genes

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

Niche partitioning among Prochlorococcus ecotypes along ocean-scale environmental gradients.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

The Calvin cycle in cyanobacteria is regulated by CP12 via the NAD(H)/NADP(H) ratio under light/dark conditions

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

Diversity and population structure of a near-shore marine-sediment viral community.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

Microarray analysis of gene expression during bacteriophage T4 infection.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

Cyanobacteria perceive nitrogen status by sensing intracellular 2-oxoglutarate levels

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

Microarray analysis of phosphate regulation in the marine cyanobacterium Synechococcus sp. WH8102

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3037559

Dephosphorylation of the phosphoprotein P(II) in Synechococcus PCC 7942: identification of an ATP and 2-oxoglutarate-regulated phosphatase activity

9 December 2018

1 reference

12 December 2020

Modular architecture of the T4 phage superfamily: a conserved core genome and a plastic periphery

1 reference

12 December 2020

Bioinformatics classification and functional analysis of PhoH homologs

1 reference

12 December 2020

Alternative oxidase and plastoquinol terminal oxidase in marine prokaryotes of the Sargasso Sea

1 reference

12 December 2020

Potential photosynthesis gene recombination between Prochlorococcus and Synechococcus via viral intermediates

1 reference

12 December 2020

10.1111/J.1462-2920.2010.02280.X

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20662890 AND SRC:MED&resulttype=core&format=json

8 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20662890 AND SRC:MED&resulttype=core&format=json

8 February 2020

PubMed publication ID

20662890

1 reference