In vivo facilitated diffusion model (Q34562478)

3 August 2017

title

In vivo facilitated diffusion model (English)

1 reference

3 August 2017

Ralf Metzler

2

0 references

author name string

Maximilian Bauer

series ordinal

1

1 reference

3 August 2017

language of work or name

English

0 references

publication date

18 January 2013

1 reference

3 August 2017

1 reference

3 August 2017

volume

8

1 reference

3 August 2017

issue

1

1 reference

3 August 2017

page(s)

e53956

1 reference

Creative Commons Attribution 4.0 International

3 August 2017

copyright license

start time

18 January 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Classes of fast and specific search mechanisms for proteins on DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548819

Generalized facilitated diffusion model for DNA-binding proteins with search and recognition states

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548819

Effects of macromolecular crowding on genetic networks

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548819

The three-dimensional architecture of a bacterial genome and its alteration by genetic perturbation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548819

A model for Escherichia coli chromosome packaging supports transcription factor-induced DNA domain formation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548819

Protein diffusion in mammalian cell cytoplasm

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548819

Theoretical and computational modeling of target-site search kinetics in vitro and in vivo

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548819

Rapid search for specific sites on DNA through conformational switch of nonspecifically bound proteins

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548819

Physics of protein–DNA interactions: mechanisms of facilitated target search

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548819

A Geometrical Model for DNA Organization in Bacteria

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548819

Bacterial Chromosomal Loci Move Subdiffusively through a Viscoelastic Cytoplasm

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548819

Entropy as the driver of chromosome segregation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548819

Spatial and topological organization of DNA chains induced by gene co-localization

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548819

Facilitated diffusion with DNA coiling.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548819

How DNA coiling enhances target localization by proteins

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548819

The organization of the bacterial genome.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548819

Sliding and jumping of single EcoRV restriction enzymes on non-cognate DNA.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548819

Spatial effects on the speed and reliability of protein-DNA search

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548819

Sampling the cell with anomalous diffusion - the discovery of slowness

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548819

How gene order is influenced by the biophysics of transcription regulation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548819

Probing transcription factor dynamics at the single-molecule level in a living cell

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548819

Internal structure and dynamics of isolated Escherichia coli nucleoids assessed by fluorescence correlation spectroscopy

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548819

Crowding and confinement effects on protein diffusion in vivo

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548819

Measurement of the contributions of 1D and 3D pathways to the translocation of a protein along DNA.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548819

Target search of N sliding proteins on a DNA

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548819

Kinetics of protein-DNA interaction: facilitated target location in sequence-dependent potential

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548819

Kinetics of target site localization of a protein on DNA: a stochastic approach.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548819

Anomalous subdiffusion is a measure for cytoplasmic crowding in living cells

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548819

Topological domain structure of the Escherichia coli chromosome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548819

Rapid and sequential movement of individual chromosomal loci to specific subcellular locations during bacterial DNA replication

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548819

Fundamental structural units of the Escherichia coli nucleoid revealed by atomic force microscopy

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548819

The influence of macromolecular crowding and macromolecular confinement on biochemical reactions in physiological media

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548819

Diffusion-driven mechanisms of protein translocation on nucleic acids. 3. The Escherichia coli lac repressor--operator interaction: kinetic measurements and conclusions.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548819

The lac repressor-operator interaction. 3. Kinetic studies

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3548819

Diffusion-driven mechanisms of protein translocation on nucleic acids. 1. Models and theory.

7 July 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0053956

The lac repressor displays facilitated diffusion in living cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0053956

Physical nature of bacterial cytoplasm.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0053956

In vivo anomalous diffusion and weak ergodicity breaking of lipid granules.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0053956

The random walk's guide to anomalous diffusion: a fractional dynamics approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0053956

Anomalous diffusion of proteins due to molecular crowding.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0053956

Facilitated Diffusion of Proteins on Chromatin

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0053956

The effects of intersegmental transfers on target location by proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0053956

Narrow escape for a stochastically gated Brownian ligand

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0053956

Universality classes of first-passage-time distribution in confined media

21 January 2018

1 reference

12 December 2020

Single molecule measurements of repressor protein 1D diffusion on DNA

1 reference

12 December 2020

Subdiffusion and weak ergodicity breaking in the presence of a reactive boundary

1 reference

12 December 2020

Facilitated diffusion on confined DNA

1 reference

12 December 2020

Geometry-controlled kinetics

1 reference

12 December 2020

10.1371/JOURNAL.PONE.0053956

Identifiers

DOI

1 reference

3 August 2017

0 references

1 reference

1 reference

3 August 2017

1 reference