EnRICH: Extraction and Ranking using Integration and Criteria Heuristics (Q34548710)

2 August 2017

1 reference

title

EnRICH: Extraction and Ranking using Integration and Criteria Heuristics (English)

1 reference

2 August 2017

Xia Zhang

1

1 reference

2 August 2017

M Heather West Greenlee

series ordinal

2

1 reference

2 August 2017

Jeanne M Serb

series ordinal

3

1 reference

2 August 2017

publication date

15 January 2013

1 reference

2 August 2017

1 reference

2 August 2017

volume

7

1 reference

2 August 2017

page(s)

4

1 reference

describes a project that uses

2 August 2017

Cytoscape

object named as

Cytoscape

2 references

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

based on heuristic

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

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Integrative network analysis identifies key genes and pathways in the progression of hepatitis C virus induced hepatocellular carcinoma

7 July 2018

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Mouse Retinal Development: A Dark Horse Model for Systems Biology Research

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3564850

Génie: literature-based gene prioritization at multi genomic scale

7 July 2018

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PINTA: a web server for network-based gene prioritization from expression data

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3564850

Prioritization and evaluation of depression candidate genes by combining multidimensional data resources

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3564850

Dominant cone-rod dystrophy: a mouse model generated by gene targeting of the GCAP1/Guca1a gene

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3564850

Gene Expression Profiling of Vasoregression in the Retina—Involvement of Microglial Cells

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3564850

A guide to web tools to prioritize candidate genes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3564850

shRNA knockdown of guanylate cyclase 2e or cyclic nucleotide gated channel alpha 1 increases photoreceptor survival in a cGMP phosphodiesterase mouse model of retinitis pigmentosa

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3564850

Integration and visualization of systems biology data in context of the genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3564850

ToppGene Suite for gene list enrichment analysis and candidate gene prioritization

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3564850

The relationship of photoreceptor degeneration to retinal vascular development and loss in mutant rhodopsin transgenic and RCS rats

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3564850

GeneMANIA: a real-time multiple association network integration algorithm for predicting gene function

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3564850

Whole genome assessment of the retinal response to diabetes reveals a progressive neurovascular inflammatory response

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3564850

ENDEAVOUR update: a web resource for gene prioritization in multiple species

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3564850

GraphWeb: mining heterogeneous biological networks for gene modules with functional significance

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3564850

Predicting cancer involvement of genes from heterogeneous data

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3564850

Rod differentiation factor NRL activates the expression of nuclear receptor NR2E3 to suppress the development of cone photoreceptors

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3564850

Global gene expression profiling of ischemic preconditioning in the rat retina.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3564850

CABIN: collective analysis of biological interaction networks

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3564850

Evidence for retinal remodelling in retinitis pigmentosa caused by PDE6B mutation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3564850

A screen for mutations in the transducin gene GNB1 in patients with autosomal dominant retinitis pigmentosa.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3564850

Transgenic mice carrying the H258N mutation in the gene encoding the beta-subunit of phosphodiesterase-6 (PDE6B) provide a model for human congenital stationary night blindness

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3564850

In vivo function of the orphan nuclear receptor NR2E3 in establishing photoreceptor identity during mammalian retinal development

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3564850

Gene expression profiles of mouse retinas during the second and third postnatal weeks

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3564850

Targeting of GFP to newborn rods by Nrl promoter and temporal expression profiling of flow-sorted photoreceptors

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3564850

A hybrid photoreceptor expressing both rod and cone genes in a mouse model of enhanced S-cone syndrome.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3564850

Mutation in the gene GUCA1A, encoding guanylate cyclase-activating protein 1, causes cone, cone-rod, and macular dystrophy

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3564850

Cone-like morphological, molecular, and electrophysiological features of the photoreceptors of the Nrl knockout mouse

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3564850

Autosomal dominant cone dystrophy caused by a novel mutation in the GCAP1 gene (GUCA1A)

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3564850

The photoreceptor-specific nuclear receptor Nr2e3 interacts with Crx and exerts opposing effects on the transcription of rod versus cone genes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3564850

The rod photoreceptor-specific nuclear receptor Nr2e3 represses transcription of multiple cone-specific genes.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3564850

Nrl is required for rod photoreceptor development

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3564850

Disease sequence from mutant rhodopsin allele to rod and cone photoreceptor degeneration in man.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3564850

The basic motif-leucine zipper transcription factor Nrl can positively regulate rhodopsin gene expression

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3564850

Enhanced S cone syndrome: evidence for an abnormally large number of S cones

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3564850

Mutations in the gene encoding the alpha subunit of the rod cGMP-gated channel in autosomal recessive retinitis pigmentosa

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3564850

SUSPECTS: enabling fast and effective prioritization of positional candidates

7 July 2018

1 reference

https://api.crossref.org/works/10.1186/1752-0509-7-4

Cytoscape: Software for Visualization and Analysis of Biological Networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1186/1752-0509-7-4

Global gene expression analysis of the developing postnatal mouse retina

21 January 2018

1 reference

https://api.crossref.org/works/10.1186/1752-0509-7-4

Molecular heterogeneity of developing retinal ganglion and amacrine cells revealed through single cell gene expression profiling

21 January 2018

1 reference

https://api.crossref.org/works/10.1186/1752-0509-7-4

Gene expression profiling of zebrafish embryonic retina

21 January 2018

1 reference

https://api.crossref.org/works/10.1186/1752-0509-7-4

Novel dominant rhodopsin mutation triggers two mechanisms of retinal degeneration and photoreceptor desensitization.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186/1752-0509-7-4

Genotype-phenotype correlation of mouse pde6b mutations

21 January 2018

1 reference

https://api.crossref.org/works/10.1186/1752-0509-7-4

Mutations in the GUCA1A gene involved in hereditary cone dystrophies impair calcium-mediated regulation of guanylate cyclase

21 January 2018

1 reference

https://api.crossref.org/works/10.1186/1752-0509-7-4

Cytoscape: a community-based framework for network modeling

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23320748

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1752-0509-7-4

1 reference

2 August 2017

DBLP publication ID

journals/bmcsb/ZhangGS13

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

1026412695

0 references

Fatcat ID

release_p2d53b2jefhbxb3t5nuz2idjzu

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/p2d53b2jefhbxb3t5nuz2idjzu

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMC publication ID

3564850

1 reference

2 August 2017

1 reference