Evolution of cis-regulatory elements in yeast de novo and duplicated new genes (Q34519001)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23256513 AND SRC:MED&resulttype=core&format=json

21 February 2020

title

Evolution of cis-regulatory elements in yeast de novo and duplicated new genes (English)

1 reference

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21 February 2020

main subject

cis-regulatory element

1 reference

4

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21 February 2020

1

Zing Tsung-Yeh Tsai

1 reference

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21 February 2020

author name string

Huai-Kuang Tsai

2

1 reference

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21 February 2020

Jen-Hao Cheng

3

1 reference

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21 February 2020

Yuan-Fan Tsai

5

1 reference

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21 February 2020

Daryi Wang

6

1 reference

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21 February 2020

language of work or name

English

0 references

publication date

21 December 2012

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21 February 2020

1 reference

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21 February 2020

volume

13

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21 February 2020

page(s)

717

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Evolutionary erosion of yeast sex chromosomes by mating-type switching accidents

21 February 2020

cites work

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7 July 2018

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Reorganizing the protein space at the Universal Protein Resource (UniProt)

7 July 2018

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Transcription Factor Binding Site Positioning in Yeast: Proximal Promoter Motifs Characterize TATA-Less Promoters

7 July 2018

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A genomic model of condition-specific nucleosome behavior explains transcriptional activity in yeast.

7 July 2018

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Inferring regulatory mechanisms from patterns of evolutionary divergence

7 July 2018

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The evolutionary origin of orphan genes

7 July 2018

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Evidence of association between Nucleosome Occupancy and the Evolution of Transcription Factor Binding Sites in Yeast

7 July 2018

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Intron retention in the Drosophila melanogaster Rieske Iron Sulphur Protein gene generated a new protein

7 July 2018

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Does positive selection drive transcription factor binding site turnover? A test with Drosophila cis-regulatory modules

7 July 2018

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De novo origin of new genes with introns in Plasmodium vivax

7 July 2018

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Novel genes exhibit distinct patterns of function acquisition and network integration

7 July 2018

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New genes in Drosophila quickly become essential

7 July 2018

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Is transcription factor binding site turnover a sufficient explanation for cis-regulatory sequence divergence?

7 July 2018

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YEASTRACT: providing a programmatic access to curated transcriptional regulatory associations in Saccharomyces cerevisiae through a web services interface

7 July 2018

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The UCSC Genome Browser database: update 2011

7 July 2018

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Origins, evolution, and phenotypic impact of new genes.

7 July 2018

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The role of nucleosome positioning in the evolution of gene regulation

7 July 2018

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Five-vertebrate ChIP-seq reveals the evolutionary dynamics of transcription factor binding

7 July 2018

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A human-specific de novo protein-coding gene associated with human brain functions

7 July 2018

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Gene duplication and the evolution of ribosomal protein gene regulation in yeast

7 July 2018

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A de novo originated gene depresses budding yeast mating pathway and is repressed by the protein encoded by its antisense strand

7 July 2018

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Conservation and regulatory associations of a wide affinity range of mouse transcription factor binding sites

7 July 2018

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The enrichment of TATA box and the scarcity of depleted proximal nucleosome in the promoters of duplicated yeast genes.

7 July 2018

1 reference

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A compiled and systematic reference map of nucleosome positions across the Saccharomyces cerevisiae genome

7 July 2018

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Emergence of a new gene from an intergenic region

7 July 2018

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Recent de novo origin of human protein-coding genes

7 July 2018

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Gene expression divergence in yeast is coupled to evolution of DNA-encoded nucleosome organization

7 July 2018

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A rice gene of de novo origin negatively regulates pathogen-induced defense response

7 July 2018

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The life and death of gene families

7 July 2018

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Origin of primate orphan genes: a comparative genomics approach

7 July 2018

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RNA-based gene duplication: mechanistic and evolutionary insights

7 July 2018

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Turning a hobby into a job: how duplicated genes find new functions

7 July 2018

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The impact of the nucleosome code on protein-coding sequence evolution in yeast

7 July 2018

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Distinct modes of regulation by chromatin encoded through nucleosome positioning signals

7 July 2018

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Using RSAT to scan genome sequences for transcription factor binding sites and cis-regulatory modules

7 July 2018

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On the origin of new genes in Drosophila

7 July 2018

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De novo origination of a new protein-coding gene in Saccharomyces cerevisiae

7 July 2018

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The transcriptional landscape of the yeast genome defined by RNA sequencing

7 July 2018

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Two strategies for gene regulation by promoter nucleosomes

7 July 2018

1 reference

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Prezygotic reproductive isolation between Saccharomyces cerevisiae and Saccharomyces paradoxus

7 July 2018

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The limits of subfunctionalization

7 July 2018

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MYBS: a comprehensive web server for mining transcription factor binding sites in yeast

7 July 2018

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Frequent gain and loss of functional transcription factor binding sites

7 July 2018

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STAMP: a web tool for exploring DNA-binding motif similarities

7 July 2018

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Evidence for de novo evolution of testis-expressed genes in the Drosophila yakuba/Drosophila erecta clade

7 July 2018

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Prevalence of the initiator over the TATA box in human and yeast genes and identification of DNA motifs enriched in human TATA-less core promoters

7 July 2018

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Novel genes derived from noncoding DNA in Drosophila melanogaster are frequently X-linked and exhibit testis-biased expression

7 July 2018

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Global analysis of the relationship between the binding of the Bas1p transcription factor and meiosis-specific double-strand DNA breaks in Saccharomyces cerevisiae

7 July 2018

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OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups

7 July 2018

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cis-Regulatory and protein evolution in orthologous and duplicate genes

7 July 2018

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Applied bioinformatics for the identification of regulatory elements

7 July 2018

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The origin of new genes: glimpses from the young and old

7 July 2018

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Gene loss, protein sequence divergence, gene dispensability, expression level, and interactivity are correlated in eukaryotic evolution

7 July 2018

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Sequencing and comparison of yeast species to identify genes and regulatory elements

7 July 2018

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Comparison of the genomes of human and mouse lays the foundation of genome zoology

7 July 2018

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FunSpec: a web-based cluster interpreter for yeast

7 July 2018

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Evolution of transcription factor binding sites in Mammalian gene regulatory regions: conservation and turnover

7 July 2018

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The probability of preservation of a newly arisen gene duplicate

7 July 2018

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Meiotic recombination frequencies are affected by nutritional states in Saccharomycescerevisiae

7 July 2018

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Positive selection of a gene family during the emergence of humans and African apes

7 July 2018

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Genetic and physical maps of Saccharomyces cerevisiae

7 July 2018

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Transcription factors are required for the meiotic recombination hotspot at the HIS4 locus in Saccharomyces cerevisiae

7 July 2018

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7 July 2018

Evolution and tinkering

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Gene regulatory network growth by duplication

7 July 2018

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RSAT 2011: regulatory sequence analysis tools.

21 January 2018

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Exploring the functional landscape of gene expression: directed search of large microarray compendia

21 January 2018

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Detecting positive selection in the budding yeast genome

21 January 2018

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Identification and distinct regulation of yeast TATA box-containing genes

21 January 2018

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Predominant Gain of Promoter TATA Box after Gene Duplication Associated with Stress Responses

21 January 2018

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A genome-wide housekeeping role for TFIID and a highly regulated stress-related role for SAGA in Saccharomyces cerevisiae

21 January 2018

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Sporulation patterning and invasive growth in wild and domesticated yeast colonies

21 January 2018

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Developmental cycle and pharmaceutically relevant compounds of Salinispora actinobacteria isolated from Great Barrier Reef marine sponges

21 January 2018

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Evolution of cis-regulatory elements in duplicated genes of yeast

27 October 2018

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Identifying and Quantifying Orphan Protein Sequences in Fungi

21 January 2018

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Evolutionary footprints of nucleosome positions in yeast

21 January 2018

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Structural features in a brittle–ductile wax model of continental extension

21 January 2018

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Phylogenetic footprinting reveals multiple regulatory elements involved in control of the meiotic recombination gene, REC102

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23256513

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A genetic signature of interspecies variations in gene expression

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23256513

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-13-717

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23256513 AND SRC:MED&resulttype=core&format=json

21 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23256513 AND SRC:MED&resulttype=core&format=json

21 February 2020

PubMed publication ID

23256513

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23256513 AND SRC:MED&resulttype=core&format=json