3D Chromosome Regulatory Landscape of Human Pluripotent Cells. (Q34505845)

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3 March 2020

title

3D Chromosome Regulatory Landscape of Human Pluripotent Cells (English)

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8

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Gianluca Pegoraro

9

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3 March 2020

Richard A. Young

13

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12

Rudolf Jaenisch

1 reference

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10

Tong Ihn Lee

1 reference

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2

Daniel B Dadon

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3 March 2020

5

Diego Borges-Rivera

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3 March 2020

11

Tom Misteli

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6

Sigal Shachar

1 reference

3 March 2020

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Xiong Ji

1

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3 March 2020

Benjamin E Powell

3

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3 March 2020

Zi Peng Fan

4

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Abraham S Weintraub

7

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3 March 2020

language of work or name

English

0 references

publication date

10 December 2015

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3 March 2020

volume

18

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issue

2

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3 March 2020

page(s)

262-275

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Hallmarks of pluripotency

3 March 2020

cites work

1 reference

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CRISPR Inversion of CTCF Sites Alters Genome Topology and Enhancer/Promoter Function

7 July 2018

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CTCF/cohesin-binding sites are frequently mutated in cancer

7 July 2018

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Mango: a bias-correcting ChIA-PET analysis pipeline

7 July 2018

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Disruptions of topological chromatin domains cause pathogenic rewiring of gene-enhancer interactions

7 July 2018

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Chromatin proteomic profiling reveals novel proteins associated with histone-marked genomic regions

7 July 2018

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Comparative Hi-C reveals that CTCF underlies evolution of chromosomal domain architecture

7 July 2018

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CTCF establishes discrete functional chromatin domains at the Hox clusters during differentiation

7 July 2018

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A large genomic deletion leads to enhancer adoption by the lamin B1 gene: a second path to autosomal dominant adult-onset demyelinating leukodystrophy (ADLD)

7 July 2018

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Chromatin architecture reorganization during stem cell differentiation.

7 July 2018

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The selection and function of cell type-specific enhancers

7 July 2018

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Enhancer-core-promoter specificity separates developmental and housekeeping gene regulation.

7 July 2018

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A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping

7 July 2018

1 reference

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Two ways to fold the genome during the cell cycle: insights obtained with chromosome conformation capture

7 July 2018

1 reference

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Chromatin loops as allosteric modulators of enhancer-promoter interactions

7 July 2018

1 reference

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Control of cell identity genes occurs in insulated neighborhoods in mammalian chromosomes

7 July 2018

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The nature of embryonic stem cells

7 July 2018

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Regulatory principles of pluripotency: from the ground state up.

7 July 2018

1 reference

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The naive state of human pluripotent stem cells: a synthesis of stem cell and preimplantation embryo transcriptome analyses

7 July 2018

1 reference

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Genome-wide map of regulatory interactions in the human genome

7 July 2018

1 reference

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Architectural proteins: regulators of 3D genome organization in cell fate

7 July 2018

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Resetting transcription factor control circuitry toward ground-state pluripotency in human

7 July 2018

1 reference

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Systematic identification of culture conditions for induction and maintenance of naive human pluripotency

7 July 2018

1 reference

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Enhancer function: mechanistic and genome-wide insights come together

7 July 2018

1 reference

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The 3D genome in transcriptional regulation and pluripotency

7 July 2018

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Looping back to leap forward: transcription enters a new era

7 July 2018

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Derivation of naive human embryonic stem cells.

7 July 2018

1 reference

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Enhancer biology and enhanceropathies

7 July 2018

1 reference

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Cohesin and CTCF differentially affect chromatin architecture and gene expression in human cells

7 July 2018

1 reference

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Induction of a human pluripotent state with distinct regulatory circuitry that resembles preimplantation epiblast.

7 July 2018

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Multiple structural maintenance of chromosome complexes at transcriptional regulatory elements.

7 July 2018

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Synthetic lethality between CCNE1 amplification and loss of BRCA1.

7 July 2018

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Cohesin-mediated interactions organize chromosomal domain architecture

7 July 2018

1 reference

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Topology of mammalian developmental enhancers and their regulatory landscapes

7 July 2018

1 reference

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Super-enhancers in the control of cell identity and disease

7 July 2018

1 reference

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Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments

7 July 2018

1 reference

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The spatial organization of the human genome

7 July 2018

1 reference

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Architectural protein subclasses shape 3D organization of genomes during lineage commitment

7 July 2018

1 reference

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The genomic landscape of cohesin-associated chromatin interactions

7 July 2018

1 reference

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Master transcription factors and mediator establish super-enhancers at key cell identity genes

7 July 2018

1 reference

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CTCF and cohesin: linking gene regulatory elements with their targets

7 July 2018

1 reference

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Transcriptional regulation and its misregulation in disease.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848748

Cohesin at active genes: a unifying theme for cohesin and gene expression from model organisms to humans

7 July 2018

1 reference

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Chromatin organization: form to function

7 July 2018

1 reference

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Widespread plasticity in CTCF occupancy linked to DNA methylation

7 July 2018

1 reference

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Systematic localization of common disease-associated variation in regulatory DNA

7 July 2018

1 reference

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The accessible chromatin landscape of the human genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848748

Transcription factors: from enhancer binding to developmental control

7 July 2018

1 reference

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Spatial partitioning of the regulatory landscape of the X-inactivation centre

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848748

Topological domains in mammalian genomes identified by analysis of chromatin interactions

7 July 2018

1 reference

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Waves of retrotransposon expansion remodel genome organization and CTCF binding in multiple mammalian lineages

7 July 2018

1 reference

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International Cancer Genome Consortium Data Portal--a one-stop shop for cancer genomics data

7 July 2018

1 reference

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CTCF-mediated functional chromatin interactome in pluripotent cells

7 July 2018

1 reference

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Hallmarks of Cancer: The Next Generation

7 July 2018

1 reference

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Mediator and cohesin connect gene expression and chromatin architecture

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848748

Notch 1 signaling is active in ovarian cancer.

7 July 2018

1 reference

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An oestrogen-receptor-α-bound human chromatin interactome

7 July 2018

1 reference

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Cohesins form chromosomal cis-interactions at the developmentally regulated IFNG locus

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848748

Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848748

CTCF physically links cohesin to chromatin

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848748

Cohesins functionally associate with CTCF on mammalian chromosome arms

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848748

Cohesin mediates transcriptional insulation by CCCTC-binding factor

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848748

Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848748

BRAF and FBXW7 (CDC4, FBW7, AGO, SEL10) mutations in distinct subsets of pancreatic cancer: potential therapeutic targets

7 July 2018

1 reference

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Chromosomal cohesin forms a ring

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848748

Molecular architecture of SMC proteins and the yeast cohesin complex

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848748

The protein CTCF is required for the enhancer blocking activity of vertebrate insulators

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848748

Expression of a β-globin gene is enhanced by remote SV40 DNA sequences

7 July 2018

1 reference

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Simian virus 40 tandem repeated sequences as an element of the early promoter

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848748

In vivo sequence requirements of the SV40 early promoter region

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848748

DNA position-specific repression of transcription by a Drosophila zinc finger protein

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848748

Derivation of novel human ground state naive pluripotent stem cells

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4848748

Reciprocal expressions of cyclin E and cyclin D1 in hepatocellular carcinoma

27 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26686465

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

An integrated encyclopedia of DNA elements in the human genome

1 reference

4 November 2023

https://opencitations.net/index/coci/api/v1/citations/10.1038/NATURE11247

Identifiers

DOI

10.1016/J.STEM.2015.11.007

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26686465 AND SRC:MED&resulttype=core&format=json

3 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26686465 AND SRC:MED&resulttype=core&format=json

3 March 2020

PubMed publication ID

26686465

1 reference