Comprehensive analysis of stop codon usage in bacteria and its correlation with release factor abundance (Q34430931)

25217634

2 August 2017

title

Comprehensive analysis of stop codon usage in bacteria and its correlation with release factor abundance (English)

1 reference

2 August 2017

1

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1 June 2020

author name string

Mikael Holm

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25217634 AND SRC:MED&resulttype=core&format=json

1 June 2020

Tobias Wiens

series ordinal

3

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1 June 2020

Suparna Sanyal

series ordinal

4

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1 June 2020

language of work or name

English

0 references

publication date

12 September 2014

1 reference

25217634

Journal of Biological Chemistry

2 August 2017

published in

1 reference

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1 June 2020

volume

289

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25217634 AND SRC:MED&resulttype=core&format=json

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issue

44

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page(s)

30334-30342

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25217634 AND SRC:MED&resulttype=core&format=json

Stop codon reassignments in the wild

1 June 2020

cites work

1 reference

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PANTHER in 2013: modeling the evolution of gene function, and other gene attributes, in the context of phylogenetic trees

6 July 2018

1 reference

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Stop codons in bacteria are not selectively equivalent

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4215218

Evolution and diversification of the organellar release factor family.

6 July 2018

1 reference

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Synonymous but not the same: the causes and consequences of codon bias

6 July 2018

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6 July 2018

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Generic algorithm to predict the speed of translational elongation: implications for protein biogenesis

6 July 2018

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The R1 conjugative plasmid increases Escherichia coli biofilm formation through an envelope stress response.

6 July 2018

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RF3 induces ribosomal conformational changes responsible for dissociation of class I release factors

6 July 2018

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Phylogenetic distribution of translational GTPases in bacteria

6 July 2018

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The frequency of translational misreading errors in E. coli is largely determined by tRNA competition.

6 July 2018

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Comparison of characteristics and function of translation termination signals between and within prokaryotic and eukaryotic organisms

6 July 2018

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Integrating high-throughput and computational data elucidates bacterial networks

6 July 2018

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Driving change: the evolution of alternative genetic codes.

6 July 2018

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The accuracy of codon recognition by polypeptide release factors

6 July 2018

1 reference

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UGA: a dual signal for 'stop' and for recoding in protein synthesis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4215218

Codon usage tabulated from international DNA sequence databases: status for the year 2000

6 July 2018

1 reference

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A direct estimation of the context effect on the efficiency of termination

6 July 2018

1 reference

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The translational termination signal database

6 July 2018

1 reference

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The identity of the base following the stop codon determines the efficiency of in vivo translational termination in Escherichia coli

6 July 2018

1 reference

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The efficiency of translation termination is determined by a synergistic interplay between upstream and downstream sequences in Saccharomyces cerevisiae.

6 July 2018

1 reference

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The Minimal Gene Complement of Mycoplasma genitalium

6 July 2018

1 reference

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Release factors differing in specificity for terminator codons

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4215218

Selective differences among translation termination codons

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4215218

Evidence that UGA is read as a tryptophan codon rather than as a stop codon by Mycoplasma pneumoniae, Mycoplasma genitalium, and Mycoplasma gallisepticum

6 July 2018

1 reference

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Recent evidence for evolution of the genetic code

6 July 2018

1 reference

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Co-variation of tRNA abundance and codon usage in Escherichia coli at different growth rates.

6 July 2018

1 reference

https://api.crossref.org/works/10.1074/JBC.M114.606632

Combining models of protein translation and population genetics to predict protein production rates from codon usage patterns

21 January 2018

1 reference

https://api.crossref.org/works/10.1074/JBC.M114.606632

Relationships among stop codon usage bias, its context, isochores, and gene expression level in various eukaryotes

21 January 2018

1 reference

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Tandem termination signals: myth or reality?

21 January 2018

1 reference

https://api.crossref.org/works/10.1074/JBC.M114.606632

Codon-reading specificities of mitochondrial release factors and translation termination at non-standard stop codons

21 January 2018

1 reference

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The concentration of polypeptide chain release factors 1 and 2 at different growth rates of Escherichia coli.

21 January 2018

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Methylation of bacterial release factors RF1 and RF2 is required for normal translation termination in vivo.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074/JBC.M114.606632

Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25217634

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1074/JBC.M114.606632

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25217634 AND SRC:MED&resulttype=core&format=json

1 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25217634 AND SRC:MED&resulttype=core&format=json

1 June 2020

25217634

1 reference