Relating repair susceptibility of carcinogen-damaged DNA with structural distortion and thermodynamic stability (Q34366187)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12140327 AND SRC:MED&resulttype=core&format=json

11 November 2019

title

Relating repair susceptibility of carcinogen-damaged DNA with structural distortion and thermodynamic stability (English)

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11 November 2019

2

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11 November 2019

5

Suse Broyde

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11 November 2019

author name string

Min Wu

series ordinal

1

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11 November 2019

Dinshaw J Patel

series ordinal

3

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11 November 2019

Nicholas E Geacintov

series ordinal

4

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11 November 2019

language of work or name

English

0 references

publication date

1 August 2002

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11 November 2019

published in

Nucleic Acids Research

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11 November 2019

volume

30

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11 November 2019

issue

15

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11 November 2019

page(s)

3422-3432

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Molecular dynamics simulation of nucleic acids: successes, limitations, and promise

11 November 2019

cites work

1 reference

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Sequential assembly of the nucleotide excision repair factors in vivo

6 July 2018

1 reference

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A multistep damage recognition mechanism for global genomic nucleotide excision repair

6 July 2018

1 reference

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Calculating structures and free energies of complex molecules: combining molecular mechanics and continuum models

6 July 2018

1 reference

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NMR evidence for syn-anti interconversion of a trans opened (10R)-dA adduct of benzo[a]pyrene (7S,8R)-diol (9R,10S)-epoxide in a DNA duplex

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137070

Variability in nucleotide excision repair and cancer risk: a review

6 July 2018

1 reference

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Damage recognition in nucleotide excision repair of DNA.

6 July 2018

1 reference

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A more unified picture for the thermodynamics of nucleic acid duplex melting: a characterization by calorimetric and volumetric techniques

6 July 2018

1 reference

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DNA damage recognition during nucleotide excision repair in mammalian cells

6 July 2018

1 reference

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Resolving the discrepancies among nucleic acid conformational analyses

6 July 2018

1 reference

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DNA adduct formation in mammalian cell cultures by polycyclic aromatic hydrocarbons (PAH) and nitro-PAH in coke oven emission extract.

6 July 2018

1 reference

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Solution Structure of the Minor Conformer of a DNA Duplex Containing a dG Mismatch Opposite a Benzo[a]pyrene Diol Epoxide/dA Adduct: Glycosidic Rotation from Syn to Anti at the Modified Deoxyadenosine

6 July 2018

1 reference

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Bipartite substrate discrimination by human nucleotide excision repair

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137070

Crystal studies of B-DNA: the answers and the questions

6 July 2018

1 reference

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Reduced surface: an efficient way to compute molecular surfaces

6 July 2018

1 reference

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6 July 2018

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Recognition of DNA adducts by human nucleotide excision repair. Evidence for a thermodynamic probing mechanism

6 July 2018

1 reference

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6 July 2018

1 reference

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Solution conformation of the (-)-trans-anti-benzo[c]phenanthrene-dA ([BPh]dA) adduct opposite dT in a DNA duplex: intercalation of the covalently attached benzo[c]phenanthrenyl ring to the 3'-side of the adduct site and comparison with the ( )-trans

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137070

Classical electrostatics in biology and chemistry

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137070

Direct Synthesis and Characterization of Site-Specific Adenosyl Adducts Derived from the Binding of a 3,4-Dihydroxy-1,2-epoxybenzo[c]phenanthrene Stereoisomer to an 11-mer Oligodeoxyribonucleotide

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137070

6 July 2018

1 reference

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Nucleic acid structure analysis: a users guide to a collection of new analysis programs

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137070

Oxidative Metabolism of Polycyclic Aromatic Hydrocarbons to Ultimate Carcinogens

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137070

Optically active benzo[c]phenanthrene diol epoxides bind extensively to adenine in DNA.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137070

6 July 2018

N-ras and human cancer.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137070

Conformational and helicoidal analysis of 30 PS of molecular dynamics on the d(CGCGAATTCGCG) double helix: "curves", dials and windows.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137070

The definition of generalized helicoidal parameters and of axis curvature for irregular nucleic acids

6 July 2018

1 reference

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Comparative dose-response tumorigenicity studies of dibenzo[alpha,l]pyrene versus 7,12-dimethylbenz[alpha]anthracene, benzo[alpha]pyrene and two dibenzo[alpha,l]pyrene dihydrodiols in mouse skin and rat mammary gland

6 July 2018

1 reference

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Free-energy component analysis of 40 protein-DNA complexes: a consensus view on the thermodynamics of binding at the molecular level

6 July 2018

1 reference

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Cyclohexene ring and Fjord region twist inversion in stereoisomeric DNA adducts of enantiomeric benzo[c]phenanthrene diol epoxides

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137070

Stereochemical, structural, and thermodynamic origins of stability differences between stereoisomeric benzo[a]pyrene diol epoxide deoxyadenosine adducts in a DNA mutational hot spot sequence

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137070

Hierarchy of DNA damage recognition in Escherichia coli nucleotide excision repair

27 October 2018

1 reference

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Molecular dynamics and continuum solvent studies of the stability of polyG-polyC and polyA-polyT DNA duplexes in solution.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137070

Definitions and nomenclature of nucleic acid structure parameters

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=137070

Solution conformation of the ( )-trans-anti-[BPh]dA adduct opposite dT in a DNA duplex: intercalation of the covalently attached benzo[c]phenanthrene to the 5'-side of the adduct site without disruption of the modified base pair

27 October 2018

1 reference

12 December 2020

Potent mammary carcinogenicity in female CD rats of a fjord region diol-epoxide of benzo[c]phenanthrene compared to a bay region diol-epoxide of benzo[a]pyrene

1 reference

12 December 2020

NMR solution structure of a nonanucleotide duplex with a dG mismatch opposite a 10R adduct derived from trans addition of a deoxyadenosine N6-amino group to (-)-(7S,8R,9R,10S)-7,8-dihydroxy-9,10-epoxy-7,8,9,10- tetrahydrobenzo[a]pyrene

1 reference

12 December 2020

A modified version of the Cornell et al. force field with improved sugar pucker phases and helical repeat

1 reference

12 December 2020

Unrepaired fjord region polycyclic aromatic hydrocarbon-DNA adducts in ras codon 61 mutational hot spots

1 reference

12 December 2020

Tumorigenicity of optical isomers of the diastereomeric bay-region 3,4-diol-1,2-epoxides of benzo(c)phenanthrene in murine tumor models

1 reference

12 December 2020

Prediction of DNA structure from sequence: a build-up technique

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKF427

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12140327 AND SRC:MED&resulttype=core&format=json

11 November 2019

1 reference

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11 November 2019

PubMed publication ID

12140327

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12140327 AND SRC:MED&resulttype=core&format=json