Breaking and joining single-stranded DNA: the HUH endonuclease superfamily (Q34355915)

30 June 2019

title

Breaking and joining single-stranded DNA: the HUH endonuclease superfamily (English)

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30 June 2019

author

Michael Chandler

1

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30 June 2019

Fernando de la Cruz

2

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30 June 2019

Gabriel Moncalian

5

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30 June 2019

author name string

Fred Dyda

3

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30 June 2019

Alison B Hickman

4

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30 June 2019

Bao Ton-Hoang

6

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30 June 2019

language of work or name

English

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publication date

8 July 2013

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30 June 2019

Nature Reviews Microbiology

published in

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30 June 2019

volume

11

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30 June 2019

issue

8

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30 June 2019

page(s)

525-538

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30 June 2019

Conserved sequence motifs in the initiator proteins for rolling circle DNA replication encoded by diverse replicons from eubacteria, eucaryotes and archaebacteria

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Rolling-circle transposons in eukaryotes

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Transposition of ISHp608, member of an unusual family of bacterial insertion sequences

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ISCR elements: novel gene-capturing systems of the 21st century?

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The diversity of conjugative relaxases and its application in plasmid classification

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A field guide to eukaryotic circular single-stranded DNA viruses: insights gained from metagenomics

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The outs and ins of transposition: from mu to kangaroo

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The two active-site tyrosine residues of the a protein play non-equivalent roles during initiation of rolling circle replication of bacteriophage p2.

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Mechanisms of site-specific recombination.

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DNA recognition and the precleavage state during single-stranded DNA transposition in D. radiodurans

31 March 2020

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Unveiling the molecular mechanism of a conjugative relaxase: The structure of TrwC complexed with a 27-mer DNA comprising the recognition hairpin and the cleavage site.

31 March 2020

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Plasmid replication initiator RepB forms a hexamer reminiscent of ring helicases and has mobile nuclease domains

31 March 2020

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Structural Insights into Single-Stranded DNA Binding and Cleavage by F Factor TraI

31 March 2020

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Inter- and intramolecular determinants of the specificity of single-stranded DNA binding and cleavage by the F factor relaxase.

31 March 2020

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Molecular basis of antibiotic multiresistance transfer in Staphylococcus aureus

31 March 2020

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31 March 2020

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Recognition and processing of the origin of transfer DNA by conjugative relaxase TrwC

31 March 2020

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The nuclease domain of adeno-associated virus rep coordinates replication initiation using two distinct DNA recognition interfaces

31 March 2020

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DNA helicase activity is associated with the replication initiator protein rep of tomato yellow leaf curl geminivirus

31 March 2020

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The interaction of bacteriophage P2 B protein with Escherichia coli DnaB helicase

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PcrA is an essential DNA helicase of Bacillus subtilis fulfilling functions both in repair and rolling-circle replication.

31 March 2020

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UvrD-dependent replication of rolling-circle plasmids in Escherichia coli

31 March 2020

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Biochemical characterization of the Staphylococcus aureus PcrA helicase and its role in plasmid rolling circle replication

31 March 2020

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The AAV origin binding protein Rep68 is an ATP-dependent site-specific endonuclease with DNA helicase activity

31 March 2020

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Mechanism of Rep-mediated adeno-associated virus origin nicking

31 March 2020

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Structuring the bacterial genome: Y1-transposases associated with REP-BIME sequences.

31 March 2020

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The processing of repetitive extragenic palindromes: the structure of a repetitive extragenic palindrome bound to its associated nuclease

31 March 2020

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Folded DNA in action: hairpin formation and biological functions in prokaryotes.

31 March 2020

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Crystallization and preliminary X-ray characterization of the relaxase domain of F factor TraI.

31 March 2020

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Interactions between the RepB initiator protein of plasmid pMV158 and two distant DNA regions within the origin of replication.

31 March 2020

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DNA Replication: The Rolling Circle Model

31 March 2020

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Plasmid rolling-circle replication: recent developments

31 March 2020

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DNA Structures Required for X174 A-Protein-directed Initiation and Termination of DNA Replication

31 March 2020

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Two juxtaposed tyrosyl-OH groups participate in phi X174 gene A protein catalysed cleavage and ligation of DNA

31 March 2020

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Mechanism of IS200/IS605 Family DNA Transposases: Activation and Transposon-Directed Target Site Selection

31 March 2020

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Change of a catalytic reaction carried out by a DNA replication protein

31 March 2020

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Contrasting lifestyles of rolling-circle phages and plasmids

31 March 2020

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Initiation of replication of plasmid pMV158: mechanisms of DNA strand-transfer reactions mediated by the initiator RepB protein

31 March 2020

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Rolling hairpin model for replication of parvovirus and linear chromosomal DNA

31 March 2020

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Crystal structure of the SF3 helicase from adeno-associated virus type 2

31 March 2020

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The amino acid linker between the endonuclease and helicase domains of adeno-associated virus type 5 Rep plays a critical role in DNA-dependent oligomerization

31 March 2020

1 reference

The interdomain linker of AAV-2 Rep68 is an integral part of its oligomerization domain: role of a conserved SF3 helicase residue in oligomerization

31 March 2020

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Structural unity among viral origin binding proteins: crystal structure of the nuclease domain of adeno-associated virus Rep

31 March 2020

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DNA helicase-mediated packaging of adeno-associated virus type 2 genomes into preformed capsids

31 March 2020

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The structure of a replication initiator unites diverse aspects of nucleic acid metabolism

31 March 2020

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Solution Structure of the Endonuclease Domain from the Master Replication Initiator Protein of the Nanovirus Faba Bean Necrotic Yellows Virus and Comparison with the Corresponding Geminivirus and Circovirus Structures † , ‡

31 March 2020

1 reference

Solution structure, divalent metal and DNA binding of the endonuclease domain from the replication initiation protein from porcine circovirus 2

31 March 2020

1 reference

A dimeric Rep protein initiates replication of a linear archaeal virus genome: implications for the Rep mechanism and viral replication

31 March 2020

1 reference

Active site of the replication protein of the rolling circle plasmid pC194.

31 March 2020

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How rolling circle plasmids control their copy number

31 March 2020

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Geminivirus replication: genetic and biochemical characterization of Rep protein function, a review

31 March 2020

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Sex in bacteria; genetic studies, 1945-1952

31 March 2020

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Conjugative DNA metabolism in Gram-negative bacteria

31 March 2020

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The repertoire of ICE in prokaryotes underscores the unity, diversity, and ubiquity of conjugation

31 March 2020

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Conjugative transposons: the tip of the iceberg.

31 March 2020

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Modular evolution of TnGBSs, a new family of integrative and conjugative elements associating insertion sequence transposition, plasmid replication, and conjugation for their spreading

31 March 2020

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Integrative and sequence characteristics of a novel genetic element, ICE6013, in Staphylococcus aureus

31 March 2020

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The integrase of the conjugative transposon Tn916 directs strand- and sequence-specific cleavage of the origin of conjugal transfer, oriT, by the endonuclease Orf20

31 March 2020

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Autonomous plasmid-like replication of a conjugative transposon

31 March 2020

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Site-specific recombinase and integrase activities of a conjugative relaxase in recipient cells

31 March 2020

1 reference

The requirements for conjugal DNA synthesis in the donor strain during Flac transfer

31 March 2020

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The mechanism and control of DNA transfer by the conjugative relaxase of resistance plasmid pCU1

31 March 2020

1 reference

The Structure of the Minimal Relaxase Domain of MobA at 2.1 Å Resolution

31 March 2020

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Roles of active site residues and the HUH motif of the F plasmid TraI relaxase

31 March 2020

1 reference

Analysis of DNA processing reactions in bacterial conjugation by using suicide oligonucleotides.

31 March 2020

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Tracking F plasmid TraI relaxase processing reactions provides insight into F plasmid transfer

31 March 2020

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Relaxase DNA binding and cleavage are two distinguishable steps in conjugative DNA processing that involve different sequence elements of the nic site

31 March 2020

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Two domains at the origin are required for replication and maintenance of broad-host-range plasmid R1162.

31 March 2020

1 reference

Replication and conjugative mobilization of broad host-range IncQ plasmids

31 March 2020

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Structure and function of primase RepB' encoded by broad-host-range plasmid RSF1010 that replicates exclusively in leading-strand mode

31 March 2020

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RepB' is required in trans for the two single-strand DNA initiation signals in oriV of plasmid RSF1010

31 March 2020

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Differential roles of the transposon termini in IS91 transposition

31 March 2020

1 reference

IS200: A salmonella-specific insertion sequence

31 March 2020

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Transposable element ISHp608 of Helicobacter pylori: nonrandom geographic distribution, functional organization, and insertion specificity

31 March 2020

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Characterization and distribution of IS8301 in the radioresistant bacterium Deinococcus radiodurans

31 March 2020

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Single-stranded DNA transposition is coupled to host replication.

31 March 2020

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Irradiation-induced Deinococcus radiodurans genome fragmentation triggers transposition of a single resident insertion sequence

31 March 2020

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Reassembly of shattered chromosomes in Deinococcus radiodurans

31 March 2020

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Reconstitution of a functional IS608 single-strand transpososome: role of non-canonical base pairing

31 March 2020

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Resetting the site: redirecting integration of an insertion sequence in a predictable way.

31 March 2020

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Single-stranded DNA intermediates in IS91 rolling-circle transposition

31 March 2020

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Molecular domestication of transposable elements: from detrimental parasites to useful host genes.

31 March 2020

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1H, 13C, and 15N NMR assignment of the master Rep protein nuclease domain from the Nanovirus FBNYV

31 March 2020

1 reference

Genetic and biochemical characterization of MbeA, the relaxase involved in plasmid ColE1 conjugative mobilization

31 March 2020

1 reference

Conserved structures and diversity of functions of RNA-binding proteins

31 March 2020

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A mechanism of duplex DNA replication revealed by enzymatic studies of phage phi X174: catalytic strand separation in advance of replication

31 March 2020

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Site-specific integration by adeno-associated virus

31 March 2020

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DNA structure modulates the oligomerization properties of the AAV initiator protein Rep68.

31 March 2020

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Integration of adeno-associated virus (AAV) and recombinant AAV vectors

31 March 2020

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A new domain of conjugative relaxase TrwC responsible for efficient oriT-specific recombination on minimal target sequences

31 March 2020

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TrwC-mediated site-specific recombination is controlled by host factors altering local DNA topology

31 March 2020

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Site-specific integration of foreign DNA into minimal bacterial and human target sequences mediated by a conjugative relaxase.

31 March 2020

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Nuclear targeting of a bacterial integrase that mediates site-specific recombination between bacterial and human target sequences

31 March 2020

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Conjugative DNA transfer into human cells by the VirB/VirD4 type IV secretion system of the bacterial pathogen Bartonella henselae.

31 March 2020

1 reference

Transfer of R388 derivatives by a pathogenesis-associated type IV secretion system into both bacteria and human cells

31 March 2020

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HUH site-specific recombinases for targeted modification of the human genome

31 March 2020

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Massive amplification of rolling-circle transposons in the lineage of the bat Myotis lucifugus

31 March 2020

1 reference

Helitrons on a roll: eukaryotic rolling-circle transposons

31 March 2020

1 reference

Treasures in the attic: rolling circle transposons discovered in eukaryotic genomes

31 March 2020

1 reference

A novel intercistronic regulatory element of prokaryotic operons

31 March 2020

1 reference

Short palindromic repetitive DNA elements in enterobacteria: a survey

31 March 2020

1 reference

Identification and characterization of repetitive extragenic palindromes (REP)-associated tyrosine transposases: implications for REP evolution and dynamics in bacterial genomes

31 March 2020

1 reference

Within-genome evolution of REPINs: a new family of miniature mobile DNA in bacteria

31 March 2020

1 reference

A chimeric ribozyme in clostridium difficile combines features of group I introns and insertion elements

31 March 2020

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Distribution of IS91 family insertion sequences in bacterial genomes: evolutionary implications

31 March 2020

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12 December 2020

Rep-mediated nicking of the adeno-associated virus origin requires two biochemical activities, DNA helicase activity and transesterification.

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12 December 2020

DNA sequences which support activities of the bacteriophage phi X174 gene A protein

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12 December 2020

The Rep78 gene product of adeno-associated virus (AAV) self-associates to form a hexameric complex in the presence of AAV ori sequences

1 reference

12 December 2020

Computer-assisted dissection of rolling circle DNA replication

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12 December 2020

The Rep52 gene product of adeno-associated virus is a DNA helicase with 3'-to-5' polarity

1 reference

12 December 2020

The mechanism of sequence-specific DNA cleavage and strand transfer by phi X174 gene A* protein

1 reference

12 December 2020

Analysis of bacteriophage phi X174 gene A protein-mediated termination and reinitiation of phi X DNA synthesis. II. Structural characterization of the covalent phi X A protein-DNA complex

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12 December 2020

Concerted action of three distinct domains in the DNA cleaving-joining reaction catalyzed by relaxase (TraI) of conjugative plasmid RP4.

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12 December 2020

Replication and control of circular bacterial plasmids.

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12 December 2020

A DNA structure is required for geminivirus replication origin function.

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12 December 2020

The family of highly interrelated single-stranded deoxyribonucleic acid plasmids

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12 December 2020

Identifiers

DOI

10.1038/NRMICRO3067

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30 June 2019

Dimensions Publication ID

0 references

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30 June 2019

PubMed publication ID

23832240

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30 June 2019