Structural elements in IGP synthase exclude water to optimize ammonia transfer. (Q34350539)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15849257 AND SRC:MED&resulttype=core&format=json

11 January 2020

title

Structural elements in IGP synthase exclude water to optimize ammonia transfer (English)

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11 January 2020

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Zaida Luthey-Schulten

4

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11 January 2020

author name string

Rommie E Amaro

1

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11 January 2020

Rebecca S Myers

2

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11 January 2020

V Jo Davisson

3

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11 January 2020

language of work or name

English

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publication date

22 April 2005

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11 January 2020

number of pages

13

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inferred from page(s)

published in

Biophysical Journal

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11 January 2020

volume

89

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11 January 2020

issue

1

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11 January 2020

page(s)

475-487

1 reference

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All-atom empirical potential for molecular modeling and dynamics studies of proteins

11 January 2020

cites work

1 reference

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COORDINATE REPRESSION OF THE SYNTHESIS OF FOUR HISTIDINE BIOSYNTHETIC ENZYMES BY HISTIDINE.

6 July 2018

1 reference

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Evolutionary profiles from the QR factorization of multiple sequence alignments

6 July 2018

1 reference

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Evolutionary profiles derived from the QR factorization of multiple structural alignments gives an economy of information.

6 July 2018

1 reference

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Mimicking enzyme evolution by generating new (betaalpha)8-barrels from (betaalpha)4-half-barrels

6 July 2018

1 reference

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Calculating potentials of mean force from steered molecular dynamics simulations

6 July 2018

1 reference

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Perforation of the tunnel wall in carbamoyl phosphate synthetase derails the passage of ammonia between sequential active sites

6 July 2018

1 reference

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Crystal structure of imidazole glycerol-phosphate dehydratase: duplication of an unusual fold

6 July 2018

1 reference

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On the evolution of structure in aminoacyl-tRNA synthetases

6 July 2018

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Electrostatic Tuning of Permeation and Selectivity in Aquaporin Water Channels

6 July 2018

1 reference

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Bias and error in estimates of equilibrium free-energy differences from nonequilibrium measurements

6 July 2018

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The first step of histidine biosynthesis.

6 July 2018

1 reference

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Developing an energy landscape for the novel function of a (beta/alpha)8 barrel: ammonia conduction through HisF.

6 July 2018

1 reference

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Toward understanding the mechanism of the complex cyclization reaction catalyzed by imidazole glycerolphosphate synthase: crystal structures of a ternary complex and the free enzyme

6 July 2018

1 reference

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Structural and dynamic properties of water around acetylcholinesterase

6 July 2018

1 reference

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Energetics of glycerol conduction through aquaglyceroporin GlpF.

6 July 2018

1 reference

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Structural evidence for ammonia tunneling across the (beta alpha)(8) barrel of the imidazole glycerol phosphate synthase bienzyme complex

6 July 2018

1 reference

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Crystal structure of imidazole glycerol phosphate synthase: a tunnel through a (beta/alpha)8 barrel joins two active sites

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366548

Divergent evolution of enzymatic function: mechanistically diverse superfamilies and functionally distinct suprafamilies

6 July 2018

1 reference

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Steered molecular dynamics investigations of protein function.

6 July 2018

1 reference

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Imidazole glycerol phosphate synthase from Thermotoga maritima. Quaternary structure, steady-state kinetics, and reaction mechanism of the bienzyme complex

6 July 2018

1 reference

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Subunit interactions and glutamine utilization by Escherichia coli imidazole glycerol phosphate synthase

6 July 2018

1 reference

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Structural evidence for evolution of the beta/alpha barrel scaffold by gene duplication and fusion

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366548

Expression and purification of imidazole glycerol phosphate synthase from Saccharomyces cerevisiae

6 July 2018

1 reference

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The small subunit of carbamoyl phosphate synthetase: snapshots along the reaction pathway

6 July 2018

1 reference

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On the origin of metabolic pathways

6 July 2018

1 reference

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An aminoacyl-tRNA synthetase paralog with a catalytic role in histidine biosynthesis

6 July 2018

1 reference

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The amidotransferase family of enzymes: molecular machines for the production and delivery of ammonia

6 July 2018

1 reference

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VMD: visual molecular dynamics

6 July 2018

1 reference

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The crystal structure of GMP synthetase reveals a novel catalytic triad and is a structural paradigm for two enzyme families

6 July 2018

1 reference

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Imidazole glycerol phosphate synthase: the glutamine amidotransferase in histidine biosynthesis

6 July 2018

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366548

The pore dimensions of gramicidin A.

6 July 2018

1 reference

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Regulation of the expression of the histidine operon in Salmonella typhimurium

6 July 2018

1 reference

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Rapid and efficient site-specific mutagenesis without phenotypic selection

6 July 2018

1 reference

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6 July 2018

1 reference

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Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366548

Multiple protein sequence alignment from tertiary structure comparison: assignment of global and residue confidence levels

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366548

Coenzymes as fossils of an earlier metabolic state

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366548

Reaction coupling through interdomain contacts in imidazole glycerol phosphate synthase

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366548

Enhancing the first enzymatic step in the histidine biosynthesis pathway increases the free histidine pool and nickel tolerance in Arabidopsis thaliana

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366548

Chromosomal alterations affecting the regulation of histidine biosynthetic enzymes in Salmonella

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366548

Substrate-induced changes in the ammonia channel for imidazole glycerol phosphate synthase

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366548

Evolution of the structure and chromosomal distribution of histidine biosynthetic genes

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366548

Molecular evolution of the histidine biosynthetic pathway

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366548

Energy charge of the adenylate pool as a regulatory parameter. Interaction with feedback modifiers

27 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15849257

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1529/BIOPHYSJ.104.058651

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15849257 AND SRC:MED&resulttype=core&format=json

release_w6vw4woakbg77ebox3fi2s2q4u

11 January 2020

Fatcat ID

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Fatcat

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mapped directly with Wikidata item

24 November 2022

based on heuristic

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15849257 AND SRC:MED&resulttype=core&format=json

11 January 2020

PubMed publication ID

15849257

1 reference