RNA editing in hepatitis delta virus genotype III requires a branched double-hairpin RNA structure. (Q34342841)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12097551 AND SRC:MED&resulttype=core&format=json

10 November 2019

title

RNA editing in hepatitis delta virus genotype III requires a branched double-hairpin RNA structure (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12097551 AND SRC:MED&resulttype=core&format=json

10 November 2019

main subject

hepatitis delta virus

object named as

hepatitis delta virus

1 reference

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12097551 AND SRC:MED&resulttype=core&format=json

10 November 2019

author name string

John L Casey

series ordinal

1

1 reference

PubMed publication ID

12097551

1 August 2017

language of work or name

English

0 references

publication date

1 August 2002

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12097551 AND SRC:MED&resulttype=core&format=json

10 November 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12097551 AND SRC:MED&resulttype=core&format=json

10 November 2019

volume

76

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12097551 AND SRC:MED&resulttype=core&format=json

10 November 2019

issue

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12097551 AND SRC:MED&resulttype=core&format=json

10 November 2019

page(s)

7385-7397

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12097551 AND SRC:MED&resulttype=core&format=json

Increased RNA editing and inhibition of hepatitis delta virus replication by high-level expression of ADAR1 and ADAR2.

10 November 2019

cites work

1 reference

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Ribozyme activity in the genomic and antigenomic RNA strands of hepatitis delta virus

6 July 2018

1 reference

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The many roles of an RNA editor.

6 July 2018

1 reference

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Specific inhibition of gene expression by small double-stranded RNAs in invertebrate and vertebrate systems

6 July 2018

1 reference

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Substrate recognition by ADAR1 and ADAR2

6 July 2018

1 reference

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Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells

6 July 2018

1 reference

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A role for upstream RNA structure in facilitating the catalytic fold of the genomic hepatitis delta virus ribozyme

6 July 2018

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6 July 2018

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Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

6 July 2018

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Crystal structure of a hepatitis delta virus ribozyme

6 July 2018

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RNA editing of brain glutamate receptor channels: mechanism and physiology

6 July 2018

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Hepatitis Delta Virus RNA Editing Is Highly Specific for the Amber/W Site and Is Suppressed by Hepatitis Delta Antigen

6 July 2018

1 reference

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Genotype-Specific Complementation of Hepatitis Delta Virus RNA Replication by Hepatitis Delta Antigen

6 July 2018

1 reference

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Self‐Cleaving Ribozymes of Hepatitis Delta Virus RNA

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=136351

Geographic Distribution and Genetic Variability of Hepatitis Delta Virus Genotype I

6 July 2018

1 reference

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The predominance of hepatitis delta virus genotype I among chronically infected Italian patients

6 July 2018

1 reference

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Viroid processing: switch from cleavage to ligation is driven by a change from a tetraloop to a loop E conformation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=136351

Hepatitis B virus (HBV)/hepatitis D virus (HDV) coinfection in outbreaks of acute hepatitis in the Peruvian Amazon basin: the roles of HDV genotype III and HBV genotype F.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=136351

RNA editing of hepatitis delta virus antigenome by dsRNA-adenosine deaminase

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=136351

The role of RNA editing in controlling glutamate receptor channel properties.

6 July 2018

1 reference

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Multiple pathways of reversion in viroids for conservation of structural elements

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=136351

A genotype of hepatitis D virus that occurs in northern South America

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=136351

Identification of a new hepatitis B virus (HBV) genotype from Brazil that expresses HBV surface antigen subtype adw4.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=136351

The molecular biology of hepatitis delta virus

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=136351

Intracellular cleavage and ligation of hepatitis delta virus genomic RNA: regulation of ribozyme activity by cis-acting sequences and host factors

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=136351

Tm studies of a tertiary structure from the human hepatitis delta agent which functions in vitro as a ribozyme control element

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=136351

Only one of four possible secondary structures of the central conserved region of potato spindle tuber viroid is a substrate for processing in a potato nuclear extract

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=136351

Hepatitis D virus RNA editing: specific modification of adenosine in the antigenomic RNA.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=136351

Regulation of the hepatitis delta virus ribozymes: to cleave or not to cleave?

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=136351

Structure, sequence and expression of the hepatitis delta (delta) viral genome

6 July 2018

1 reference

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Antigens of hepatitis delta virus in the liver and serum of humans and animals

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=136351

Production of hepatitis B virus particles in Hep G2 cells transfected with cloned hepatitis B virus DNA.

6 July 2018

1 reference

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Initiation of replication of the human hepatitis delta virus genome from cloned DNA: role of delta antigen

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=136351

CUUCGG hairpins: extraordinarily stable RNA secondary structures associated with various biochemical processes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=136351

A single antigenomic open reading frame of the hepatitis delta virus encodes the epitope(s) of both hepatitis delta antigen polypeptides p24 delta and p27 delta

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=136351

A specific base transition occurs on replicating hepatitis delta virus RNA

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=136351

The self-cleaving domain from the genomic RNA of hepatitis delta virus: sequence requirements and the effects of denaturant

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=136351

Architecture of ribosomal RNA: constraints on the sequence of "tetra-loops"

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=136351

The novel tertiary structure in delta RNA may function as a ribozyme control element

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=136351

A pseudoknot-like structure required for efficient self-cleavage of hepatitis delta virus RNA.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=136351

Formation of a thermodynamically metastable structure containing hairpin II is critical for infectivity of potato spindle tuber viroid RNA.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=136351

The large form of hepatitis delta antigen is crucial for assembly of hepatitis delta virus

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=136351

Immunoblot analysis demonstrates that the large and small forms of hepatitis delta virus antigen have different C-terminal amino acid sequences

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=136351

Assembly of hepatitis delta virus particles

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=136351

Structural requirements for RNA editing in hepatitis delta virus: evidence for a uridine-to-cytidine editing mechanism

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=136351

Secreted placental alkaline phosphatase as a eukaryotic reporter gene

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=136351

The strands of both polarities of a small circular RNA from carnation self-cleave in vitro through alternative double- and single-hammerhead structures

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=136351

Characterization of hepatitis D virus genotype III among Yucpa Indians in Venezuela

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=136351

An outbreak of fulminant hepatitis delta in the Waorani, an indigenous people of the Amazon basin of Ecuador

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=136351

Characterization and phylogenetic analysis of a novel hepatitis D virus strain discovered by restriction fragment length polymorphism analysis

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=136351

Structural features of the UCCG and UGCG tetraloops in very short hairpins as evidenced by optical spectroscopy

27 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/12097551

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

1 reference

https://pubmed.ncbi.nlm.nih.gov/12097551

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1128/JVI.76.15.7385-7397.2002

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12097551 AND SRC:MED&resulttype=core&format=json

10 November 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12097551 AND SRC:MED&resulttype=core&format=json

10 November 2019

PubMed publication ID

12097551

1 reference