Protein unfolding by biological unfoldases: insights from modeling (Q34310114)

25296319

1 August 2017

title

Protein unfolding by biological unfoldases: insights from modeling (English)

1 reference

1 August 2017

1

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5 June 2020

Mariano Carrión-Vázquez

series ordinal

3

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5 June 2020

4

Marek Cieplak

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5 June 2020

author name string

Piotr Szymczak

series ordinal

2

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5 June 2020

language of work or name

English

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publication date

1 October 2014

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25296319

1 August 2017

number of pages

8

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inferred from page(s)

published in

Biophysical Journal

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volume

107

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issue

7

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page(s)

1661-1668

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Tight knots in proteins: can they block the mitochondrial pores?

5 June 2020

cites work

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The direction of protein entry into the proteasome determines the variety of products and depends on the force needed to unfold its two termini.

6 July 2018

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Stepwise unfolding of a β barrel protein by the AAA ClpXP protease.

6 July 2018

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ClpX(P) generates mechanical force to unfold and translocate its protein substrates

6 July 2018

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Protease power strokes force proteins to unfold

6 July 2018

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Single-molecule protein unfolding and translocation by an ATP-fueled proteolytic machine.

6 July 2018

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AAA Proteases: ATP-Fueled Machines of Protein Destruction

6 July 2018

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6 July 2018

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Unfolding and translocation pathway of substrate protein controlled by structure in repetitive allosteric cycles of the ClpY ATPase

6 July 2018

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6 July 2018

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Ubiquitin not only serves as a tag but also assists degradation by inducing protein unfolding

6 July 2018

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Mechanical strength of 17,134 model proteins and cysteine slipknots

6 July 2018

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On the remarkable mechanostability of scaffoldins and the mechanical clamp motif

6 July 2018

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Structural Insights into the Regulatory Particle of the Proteasome from Methanocaldococcus jannaschii

6 July 2018

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Computer simulations and theory of protein translocation.

6 July 2018

1 reference

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Selection of optimal variants of Gō-like models of proteins through studies of stretching

6 July 2018

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Extracting kinetics from single-molecule force spectroscopy: nanopore unzipping of DNA hairpins

6 July 2018

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Mechanism of DNA transport through pores

6 July 2018

1 reference

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Prediction of the translocation kinetics of a protein from its mechanical properties

6 July 2018

1 reference

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Comparison of the protein-unfolding pathways between mitochondrial protein import and atomic-force microscopy measurements

6 July 2018

1 reference

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Effect of protein structure on mitochondrial import.

6 July 2018

1 reference

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Protein unfolding in the cell

6 July 2018

1 reference

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Universality classes in folding times of proteins

6 July 2018

1 reference

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Global unfolding of a substrate protein by the Hsp100 chaperone ClpA.

6 July 2018

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6 July 2018

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The packing density in proteins: standard radii and volumes.

6 July 2018

1 reference

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Structure of 20S proteasome from yeast at 2.4 A resolution

6 July 2018

1 reference

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Proteases and their targets in Escherichia coli

6 July 2018

1 reference

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Structure and functions of the 20S and 26S proteasomes

6 July 2018

1 reference

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ATP-dependent proteases in prokaryotic and eukaryotic cells

6 July 2018

1 reference

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The ClpXP protease unfolds substrates using a constant rate of pulling but different gears.

6 July 2018

1 reference

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Theoretical tests of the mechanical protection strategy in protein nanomechanics

28 October 2018

1 reference

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Asymmetric processing of a substrate protein in sequential allosteric cycles of AAA nanomachines.

28 October 2018

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Mechanism of transient binding and release of substrate protein during the allosteric cycle of the p97 nanomachine.

28 October 2018

1 reference

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Intrinsic Disorder in Ubiquitination Substrates

28 October 2018

1 reference

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The proteasome antechamber maintains substrates in an unfolded state

28 October 2018

1 reference

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Protein unfolding by a AAA protease is dependent on ATP-hydrolysis rates and substrate energy landscapes.

28 October 2018

1 reference

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Computer simulations of the translocation and unfolding of a protein pulled mechanically through a pore

28 October 2018

1 reference

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Effects of local protein stability and the geometric position of the substrate degradation tag on the efficiency of ClpXP denaturation and degradation

28 October 2018

1 reference

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Linkage between ATP consumption and mechanical unfolding during the protein processing reactions of an AAA degradation machine.

28 October 2018

1 reference

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Concurrent translocation of multiple polypeptide chains through the proteasomal degradation channel

28 October 2018

1 reference

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ATP-dependent proteases degrade their substrates by processively unraveling them from the degradation signal

28 October 2018

1 reference

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Methotrexate inhibits proteolysis of dihydrofolate reductase by the N-end rule pathway.

28 October 2018

1 reference

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Models for the binding of methotrexate to Escherichia coli dihydrofolate reductase: direct effect of carboxylate of aspartic acid 27 upon ultraviolet spectrum of methotrexate

28 October 2018

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12 December 2020

Dynamics of Polymer Translocation through Nanopores: Theory Meets Experiment

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12 December 2020

Translocation of a beta-hairpin-forming peptide through a cylindrical tunnel

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12 December 2020

Translocation of a knotted polypeptide through a pore

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12 December 2020

Repetitive pulling catalyzes co-translocational unfolding of barnase during import through a mitochondrial pore

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12 December 2020

10.1016/J.BPJ.2014.07.035

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5 June 2020

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5 June 2020

25296319

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