High-throughput sequencing for detection of subpopulations of bacteria not previously associated with artisanal cheeses. (Q34299283)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22685131 AND SRC:MED&resulttype=core&format=json

4 February 2020

title

High-throughput sequencing for detection of subpopulations of bacteria not previously associated with artisanal cheeses (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22685131 AND SRC:MED&resulttype=core&format=json

high-throughput sequencing

4 February 2020

main subject

cheese

0 references

1 reference

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22685131 AND SRC:MED&resulttype=core&format=json

4 February 2020

Paul D. Cotter

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22685131 AND SRC:MED&resulttype=core&format=json

4 February 2020

author name string

Lisa Quigley

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22685131 AND SRC:MED&resulttype=core&format=json

4 February 2020

Orla O'Sullivan

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22685131 AND SRC:MED&resulttype=core&format=json

4 February 2020

Tom P Beresford

3

1 reference

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4 February 2020

Gerald F Fitzgerald

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22685131 AND SRC:MED&resulttype=core&format=json

4 February 2020

language of work or name

English

0 references

publication date

8 June 2012

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22685131 AND SRC:MED&resulttype=core&format=json

Applied and Environmental Microbiology

4 February 2020

published in

1 reference

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4 February 2020

volume

78

1 reference

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4 February 2020

issue

16

1 reference

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4 February 2020

page(s)

5717-5723

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22685131 AND SRC:MED&resulttype=core&format=json

Molecular approaches to analysing the microbial composition of raw milk and raw milk cheese.

4 February 2020

cites work

1 reference

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6 July 2018

1 reference

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High-throughput sequence-based analysis of the bacterial composition of kefir and an associated kefir grain.

6 July 2018

1 reference

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QIIME allows analysis of high-throughput community sequencing data

6 July 2018

1 reference

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Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities

6 July 2018

1 reference

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Comparative analysis of pyrosequencing and a phylogenetic microarray for exploring microbial community structures in the human distal intestine

6 July 2018

1 reference

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Investigation of archaeal and bacterial diversity in fermented seafood using barcoded pyrosequencing.

6 July 2018

1 reference

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Polyphasic study of microbial communities of two Spanish farmhouse goats' milk cheeses from Sierra de Aracena.

6 July 2018

1 reference

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The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

6 July 2018

1 reference

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Helcococcus ovis, an emerging pathogen in bovine valvular endocarditis

6 July 2018

1 reference

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Comparative analysis of human gut microbiota by barcoded pyrosequencing

6 July 2018

1 reference

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Simultaneous assessment of soil microbial community structure and function through analysis of the meta-transcriptome

6 July 2018

1 reference

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Pyrosequencing enumerates and contrasts soil microbial diversity

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3406138

Production of volatile aroma compounds by bacterial strains isolated from different surface-ripened French cheeses

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3406138

Stability of microbial communities in goat milk during a lactation year: molecular approaches

6 July 2018

1 reference

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Monitoring bacterial communities in raw milk and cheese by culture-dependent and -independent 16S rRNA gene-based analyses

6 July 2018

1 reference

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MEGAN analysis of metagenomic data

6 July 2018

1 reference

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Microbial diversity in the deep sea and the underexplored "rare biosphere"

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3406138

Surface microflora of four smear-ripened cheeses

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3406138

Helcococcus sueciensis sp. nov., isolated from a human wound

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3406138

Molecular fingerprinting of dairy microbial ecosystems by use of temporal temperature and denaturing gradient gel electrophoresis.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3406138

Assessment of the rind microbial diversity in a farmhouse-produced vs a pasteurized industrially produced soft red-smear cheese using both cultivation and rDNA-based methods

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3406138

Helcococcus ovis isolated from a pulmonary abscess in a horse

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3406138

PCR-DGGE fingerprinting: novel strategies for detection of microbes in food.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3406138

Flavours of cheese products: metabolic pathways, analytical tools and identification of producing strains

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3406138

Characterization of several Psychrobacter strains isolated from Antarctic environments and description of Psychrobacter luti sp. nov. and Psychrobacter fozii sp. nov.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3406138

Bacterial community dynamics during production of registered designation of origin Salers cheese as evaluated by 16S rRNA gene single-strand conformation polymorphism analysis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3406138

Bacterial community structure and location in Stilton cheese.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3406138

Growth requirements and fermentation products of Fusobacterium prausnitzii, and a proposal to reclassify it as Faecalibacterium prausnitzii gen. nov., comb. nov.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3406138

A carotenogenic gene cluster from Brevibacterium linens with novel lycopene cyclase genes involved in the synthesis of aromatic carotenoids

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3406138

Antimicrobial properties of allicin from garlic

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3406138

Basic local alignment search tool

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3406138

Facultative anaerobic halophilic and alkaliphilic bacteria isolated from a natural smear ecosystem inhibit Listeria growth in early ripening stages

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3406138

Microbiological characterisation of Robiola di Roccaverano cheese using PCR-DGGE.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3406138

Application of SSCP-PCR fingerprinting to profile the yeast community in raw milk Salers cheeses.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3406138

Relationships between sensorial characteristics and microbial dynamics in "Registered Designation of Origin" Salers cheese.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3406138

Does smearing inoculum reflect the bacterial composition of the smear at the end of the ripening of a French soft, red-smear cheese?

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3406138

The late blowing in cheese: a new molecular approach based on PCR and DGGE to study the microbial ecology of the alteration process

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3406138

Molecular evaluation of microbial diversity occurring in different types of Mozzarella cheese.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3406138

Artisanal and experimental Pecorino Siciliano cheese: microbial dynamics during manufacture assessed by culturing and PCR-DGGE analyses

28 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22685131

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Isolation of Helcococcus ovis from sheep with pleuritis and bronchopneumonia

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22685131

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1128/AEM.00918-12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22685131 AND SRC:MED&resulttype=core&format=json

4 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22685131 AND SRC:MED&resulttype=core&format=json

4 February 2020

PubMed publication ID

22685131

1 reference