Towards standardisation of cell-free DNA measurement in plasma: controls for extraction efficiency, fragment size bias and quantification (Q34277946)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24853859 AND SRC:MED&resulttype=core&format=json

19 March 2020

title

Towards standardisation of cell-free DNA measurement in plasma: controls for extraction efficiency, fragment size bias and quantification (English)

1 reference

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19 March 2020

1 reference

3

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19 March 2020

Jim Huggett

7

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19 March 2020

author name string

Alison S Devonshire

1

1 reference

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19 March 2020

Alexandra S Whale

2

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19 March 2020

Gerwyn Jones

4

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19 March 2020

Simon Cowen

5

1 reference

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19 March 2020

Carole A Foy

6

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19 March 2020

language of work or name

English

0 references

publication date

24 May 2014

1 reference

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19 March 2020

number of pages

14

1 reference

Analytical and Bioanalytical Chemistry

inferred from page(s)

published in

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19 March 2020

volume

406

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19 March 2020

issue

26

1 reference

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19 March 2020

page(s)

6499-6512

1 reference

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Creative Commons Attribution 4.0 International

19 March 2020

copyright license

start time

24 May 2014

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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6 July 2018

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6 July 2018

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Comparison of microfluidic digital PCR and conventional quantitative PCR for measuring copy number variation

6 July 2018

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Current status and future potential of somatic mutation testing from circulating free DNA in patients with solid tumours

6 July 2018

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6 July 2018

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Implementing prenatal diagnosis based on cell-free fetal DNA: accurate identification of factors affecting fetal DNA yield

6 July 2018

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Methods for isolation of cell-free plasma DNA strongly affect DNA yield

6 July 2018

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6 July 2018

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Universal noninvasive detection of solid organ transplant rejection

6 July 2018

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Detection of HER2 amplification in circulating free DNA in patients with breast cancer.

6 July 2018

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Circulating nucleic acids in cancer and pregnancy

6 July 2018

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Improving enrichment of circulating fetal DNA for genetic testing: size fractionation followed by whole gene amplification

6 July 2018

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6 July 2018

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Noninvasive prenatal diagnosis of fetal aneuploidies and Mendelian disorders: new innovative strategies

6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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Circulating free DNA in plasma or serum as biomarker of carcinogenesis: practical aspects and biological significance

6 July 2018

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Circulating nucleic acids (CNAs) and cancer--a survey

6 July 2018

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Alu elements as regulators of gene expression

6 July 2018

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Real-time RT-PCR normalisation; strategies and considerations.

6 July 2018

1 reference

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Pitfalls of quantitative real-time reverse-transcription polymerase chain reaction

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4182654

Amniocentesis and chorionic villus sampling for prenatal diagnosis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4182654

Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes

6 July 2018

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Purification and characterization of PCR-inhibitory components in blood cells

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4182654

Cell-free DNA in human blood plasma: length measurements in patients with pancreatic cancer and healthy controls

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4182654

Isolation and characterization of DNA from the plasma of cancer patients

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4182654

A highly conserved repetitive DNA sequence, (TTAGGG)n, present at the telomeres of human chromosomes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4182654

Sequence organization of the human genome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4182654

Free DNA in the serum of cancer patients and the effect of therapy.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4182654

Reliable noninvasive prenatal testing by massively parallel sequencing of circulating cell-free DNA from maternal plasma processed up to 24h after venipuncture

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4182654

Selection of the optimal manual method of cell free fetal DNA isolation from maternal plasma.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4182654

Influence of temperature during transportation on cell-free DNA analysis.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4182654

Validation of reference gene stability for APAP hepatotoxicity studies in different in vitro systems and identification of novel potential toxicity biomarkers

28 October 2018

1 reference

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Comparison of 7 methods for extracting cell-free DNA from serum samples of colorectal cancer patients.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4182654

Isolation of cell-free DNA from maternal plasma using manual and automated systems

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4182654

Workshop report on the extraction of foetal DNA from maternal plasma

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4182654

Improvement in fetal DNA extraction from maternal plasma. Evaluation of the NucliSens Magnetic Extraction system and the QIAamp DSP Virus Kit in comparison with the QIAamp DNA Blood Mini Kit.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4182654

Prediction of MYCN amplification in neuroblastoma using serum DNA and real-time quantitative polymerase chain reaction.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4182654

Accurate and robust quantification of circulating fetal and total DNA in maternal plasma from 5 to 41 weeks of gestation.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4182654

Mutant DNA in plasma of lung cancer patients: potential for monitoring response to therapy

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4182654

Increased plasma DNA integrity in cancer patients.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4182654

Allele specific Taqman-based real-time PCR assay to quantify circulating BRAFV600E mutated DNA in plasma of melanoma patients

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4182654

Isolation and Extraction of Circulating Tumor DNA from Patients with Small Cell Lung Cancer

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4182654

Improved method for isolating cell-free DNA

28 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24853859

12 December 2020

inferred from PubMed ID database lookup

Origin of plasma cell-free DNA after solid organ transplantation

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24853859

12 December 2020

inferred from PubMed ID database lookup

Effects of blood-processing protocols on fetal and total DNA quantification in maternal plasma

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24853859

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1007/S00216-014-7835-3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24853859 AND SRC:MED&resulttype=core&format=json

19 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24853859 AND SRC:MED&resulttype=core&format=json

19 March 2020

PubMed publication ID

24853859

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24853859 AND SRC:MED&resulttype=core&format=json