Why do protein folding rates correlate with metrics of native topology? (Q34256511)

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31 January 2020

title

Why do protein folding rates correlate with metrics of native topology? (English)

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31 January 2020

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1

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31 January 2020

Rui Travasso

2

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31 January 2020

Andrea Parisi

3

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31 January 2020

Antonio Rey

4

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31 January 2020

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Patrícia F N Faísca

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31 July 2017

Rui D M Travasso

2

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22558173

31 July 2017

Andrea Parisi

3

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22558173

31 July 2017

language of work or name

English

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publication date

27 April 2012

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31 January 2020

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31 January 2020

volume

7

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issue

4

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31 January 2020

page(s)

e35599

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Creative Commons Attribution 4.0 International

31 January 2020

copyright license

start time

27 April 2012

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

Cooperativity, Local-Nonlocal Coupling, and Nonnative Interactions: Principles of Protein Folding from Coarse-Grained Models

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Non‐native interactions play an effective role in protein folding dynamics

6 July 2018

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Coordinate-dependent diffusion in protein folding

6 July 2018

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What have we learned from the studies of two-state folders, and what are the unanswered questions about two-state protein folding?

6 July 2018

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Identifying critical residues in protein folding: Insights from phi-value and P(fold) analysis

6 July 2018

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Kinetic barriers and the role of topology in protein and RNA folding

6 July 2018

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Loop-closure principles in protein folding

6 July 2018

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P versus Q: structural reaction coordinates capture protein folding on smooth landscapes

6 July 2018

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Nucleation and the transition state of the SH3 domain

6 July 2018

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Protein folding and the organization of the protein topology universe.

6 July 2018

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Transition states for protein folding have native topologies despite high structural variability

6 July 2018

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Contact order revisited: influence of protein size on the folding rate

6 July 2018

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The present view of the mechanism of protein folding

6 July 2018

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Self-consistent determination of the transition state for protein folding: application to a fibronectin type III domain

6 July 2018

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The topomer search model: A simple, quantitative theory of two-state protein folding kinetics

6 July 2018

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How the folding rate constant of simple, single-domain proteins depends on the number of native contacts

6 July 2018

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Prediction of folding mechanism for circular-permuted proteins

6 July 2018

1 reference

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Three key residues form a critical contact network in a protein folding transition state

6 July 2018

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Topology, stability, sequence, and length: defining the determinants of two-state protein folding kinetics

6 July 2018

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Kinetics, thermodynamics and evolution of non-native interactions in a protein folding nucleus

6 July 2018

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Transition-state structure as a unifying basis in protein-folding mechanisms: contact order, chain topology, stability, and the extended nucleus mechanism

6 July 2018

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A simple model for calculating the kinetics of protein folding from three-dimensional structures

6 July 2018

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The topomer-sampling model of protein folding

6 July 2018

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Lattice models for proteins reveal multiple folding nuclei for nucleation-collapse mechanism

6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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A critical assessment of the topomer search model of protein folding using a continuum explicit-chain model with extensive conformational sampling

6 July 2018

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Specific nucleus as the transition state for protein folding: evidence from the lattice model.

21 January 2018

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Contact order dependent protein folding rates: kinetic consequences of a cooperative interplay between favorable nonlocal interactions and local conformational preferences.

21 January 2018

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Use of the Weighted Histogram Analysis Method for the Analysis of Simulated and Parallel Tempering Simulations

21 January 2018

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21 January 2018

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Rate determining factors in protein model structures

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12 December 2020

Proteins with selected sequences fold into unique native conformation

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12 December 2020

Chain Length Scaling of Protein Folding Time

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12 December 2020

Do proteins with similar folds have similar transition state structures? A diffuse transition state of the 169 residue apoflavodoxin

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12 December 2020

Cooperativity in protein folding: from lattice models with sidechains to real proteins

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Universality and diversity of the protein folding scenarios: a comprehensive analysis with the aid of a lattice model

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10.1371/JOURNAL.PONE.0035599

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31 January 2020

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31 January 2020

22558173

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