Lag phase is a distinct growth phase that prepares bacteria for exponential growth and involves transient metal accumulation. (Q34238024)

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17 January 2020

title

Lag phase is a distinct growth phase that prepares bacteria for exponential growth and involves transient metal accumulation (English)

1 reference

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17 January 2020

1 reference

6

1 reference

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17 January 2020

Jozsef Baranyi

10

1 reference

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17 January 2020

Michael W Peck

11

1 reference

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17 January 2020

Jay C. D. Hinton

12

1 reference

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17 January 2020

4

Carmen Pin

1 reference

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17 January 2020

3

Sacha Lucchini

1 reference

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17 January 2020

author name string

Christopher J Rice

2

1 reference

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17 January 2020

Arthur Thompson

5

1 reference

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17 January 2020

Mark Alston

7

1 reference

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17 January 2020

Michael F Stringer

8

1 reference

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17 January 2020

Roy P Betts

9

1 reference

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17 January 2020

Matthew D Rolfe

1

1 reference

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17 January 2020

language of work or name

English

0 references

publication date

2 December 2011

1 reference

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17 January 2020

number of pages

16

1 reference

inferred from page(s)

published in

Journal of Bacteriology

1 reference

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17 January 2020

volume

194

1 reference

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17 January 2020

issue

3

1 reference

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17 January 2020

page(s)

686-701

1 reference

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Fe-S clusters, fragile sentinels of the cell.

17 January 2020

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Fur and the novel regulator YqjI control transcription of the ferric reductase gene yqjH in Escherichia coli

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On the Nature of Bacterial Lag.

6 July 2018

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Carbon metabolism of intracellular bacterial pathogens and possible links to virulence

6 July 2018

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Cooperation between translating ribosomes and RNA polymerase in transcription elongation

6 July 2018

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Stationary phase in gram-negative bacteria.

6 July 2018

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Network analysis of the transcriptional pattern of young and old cells of Escherichia coli during lag phase

6 July 2018

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THE OXYGEN CONSUMPTION OF ESCHERICHIA COLI DURING THE LAG AND LOGARITHMIC PHASES OF GROWTH

6 July 2018

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Simultaneous assay of every Salmonella Typhi gene using one million transposon mutants

6 July 2018

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Proteolysis of sigmaS (RpoS) and the general stress response in Escherichia coli

6 July 2018

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Manganese import is a key element of the OxyR response to hydrogen peroxide in Escherichia coli

6 July 2018

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Growth-rate-dependent partitioning of RNA polymerases in bacteria

6 July 2018

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Adrenaline modulates the global transcriptional profile of Salmonella revealing a role in the antimicrobial peptide and oxidative stress resistance responses

6 July 2018

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Ni(II) and Co(II) sensing by Escherichia coli RcnR.

6 July 2018

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(p)ppGpp: still magical?

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Promoter specificity for 6S RNA regulation of transcription is determined by core promoter sequences and competition for region 4.2 of sigma70.

6 July 2018

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A bacterial kind of aging

6 July 2018

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Escherichia coli physiology in Luria-Bertani broth

6 July 2018

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The sigmaS subunit of RNA polymerase as a signal integrator and network master regulator in the general stress response in Escherichia coli

6 July 2018

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Causes and consequences of DNA repair activity modulation during stationary phase in Escherichia coli

6 July 2018

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Metal sensor proteins: nature's metalloregulated allosteric switches.

6 July 2018

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Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles

6 July 2018

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Anatomy of Escherichia coli sigma70 promoters.

6 July 2018

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H-NS mediates the silencing of laterally acquired genes in bacteria

6 July 2018

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The iron-sulfur clusters in Escherichia coli succinate dehydrogenase direct electron flow

6 July 2018

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MEME: discovering and analyzing DNA and protein sequence motifs

6 July 2018

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Overflow metabolism in Escherichia coli during steady-state growth: transcriptional regulation and effect of the redox ratio

6 July 2018

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Two Sample Logo: a graphical representation of the differences between two sets of sequence alignments

6 July 2018

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Insights into transcriptional regulation and sigma competition from an equilibrium model of RNA polymerase binding to DNA

6 July 2018

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Long-term survival during stationary phase: evolution and the GASP phenotype

6 July 2018

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Salmonella transcriptomics: relating regulons, stimulons and regulatory networks to the process of infection.

6 July 2018

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Comparative and functional genomic analysis of prokaryotic nickel and cobalt uptake transporters: evidence for a novel group of ATP-binding cassette transporters

6 July 2018

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Studies of the distribution of Escherichia coli cAMP-receptor protein and RNA polymerase along the E. coli chromosome.

6 July 2018

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ChIPOTle: a user-friendly tool for the analysis of ChIP-chip data

6 July 2018

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A design for life: prokaryotic metal-binding MerR family regulators.

6 July 2018

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H-NS is a part of a thermally controlled mechanism for bacterial gene regulation.

6 July 2018

1 reference

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Structure, function, and formation of biological iron-sulfur clusters

6 July 2018

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Defense against protein carbonylation by DnaK/DnaJ and proteases of the heat shock regulon

6 July 2018

1 reference

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Alternative sigma factor interactions in Salmonella: sigma and sigma promote antioxidant defences by enhancing sigma levels

6 July 2018

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EcoCyc: a comprehensive database resource for Escherichia coli

6 July 2018

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Metal ion transport and regulation in Mycobacterium tuberculosis

6 July 2018

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Predictive modelling of the microbial lag phase: a review

6 July 2018

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WebLogo: A Sequence Logo Generator

6 July 2018

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The KEGG resource for deciphering the genome

6 July 2018

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The free-radical hypothesis of aging goes prokaryotic

6 July 2018

1 reference

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The gyr genes of Salmonella enterica serovar Typhimurium are repressed by the factor for inversion stimulation, Fis.

6 July 2018

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Nickel uptake and utilization by microorganisms

6 July 2018

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Bacterial iron homeostasis

6 July 2018

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Differential oxidative damage and expression of stress defence regulons in culturable and non-culturable Escherichia coli cells

6 July 2018

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Polynucleotide phosphorylase is a global regulator of virulence and persistency in Salmonella enterica.

6 July 2018

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Recent insights into the general stress response regulatory network in Escherichia coli.

6 July 2018

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Femtomolar sensitivity of metalloregulatory proteins controlling zinc homeostasis

6 July 2018

1 reference

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BioProspector: discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes.

6 July 2018

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Functional modulation of Escherichia coli RNA polymerase

6 July 2018

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Identification of RpoS (sigma(S))-regulated genes in Salmonella enterica serovar typhimurium

6 July 2018

1 reference

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Multiprobe RNase protection assay analysis of mRNA levels for the Escherichia coli oxidative DNA glycosylase genes under conditions of oxidative stress

6 July 2018

1 reference

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Oxidative stress in bacteria and protein damage by reactive oxygen species.

6 July 2018

1 reference

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Iron and oxidative stress in bacteria

6 July 2018

1 reference

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An assessment of the role of intracellular free Ca2 in E. coli

6 July 2018

1 reference

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Bacterial senescence: stasis results in increased and differential oxidation of cytoplasmic proteins leading to developmental induction of the heat shock regulon

6 July 2018

1 reference

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The L-isoaspartyl protein repair methyltransferase enhances survival of aging Escherichia coli subjected to secondary environmental stresses

6 July 2018

1 reference

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The ins and outs of virulence gene expression: Mg2 as a regulatory signal

6 July 2018

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Molybdenum-cofactor-containing enzymes: structure and mechanism

6 July 2018

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The role of the thioredoxin and glutaredoxin pathways in reducing protein disulfide bonds in the Escherichia coli cytoplasm.

6 July 2018

1 reference

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Cellular and molecular physiology of Escherichia coli in the adaptation to aerobic environments

6 July 2018

1 reference

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A dynamic approach to predicting bacterial growth in food.

6 July 2018

1 reference

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Growth rate regulation of Escherichia coli acetyl coenzyme A carboxylase, which catalyzes the first committed step of lipid biosynthesis

6 July 2018

1 reference

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Fur regulon of Salmonella typhimurium: identification of new iron-regulated genes.

6 July 2018

1 reference

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Cloning of the two pyruvate kinase isoenzyme structural genes from Escherichia coli: the relative roles of these enzymes in pyruvate biosynthesis

6 July 2018

1 reference

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Sequence, regulation, and functions of fis in Salmonella typhimurium

6 July 2018

1 reference

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The regulation of ribosomal RNA synthesis and bacterial cell growth

6 July 2018

1 reference

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Aromatic-dependent Salmonella typhimurium are non-virulent and effective as live vaccines

6 July 2018

1 reference

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Comparison of the mechanisms of two distinct aldolases from Escherichia coli grown on gluconeogenic substrates

6 July 2018

1 reference

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Action of CAP on the malT promoter in vitro

6 July 2018

1 reference

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E.coli Fis protein activates ribosomal RNA transcription in vitro and in vivo

6 July 2018

1 reference

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The role of FIS in trans activation of stable RNA operons of E. coli

6 July 2018

1 reference

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The E.coli fis promoter is subject to stringent control and autoregulation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3264077

Dramatic changes in Fis levels upon nutrient upshift in Escherichia coli

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3264077

Involvement of Fis protein in replication of the Escherichia coli chromosome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3264077

Regulation of the amount and of the activity of phosphofructokinases and pyruvate kinases in Escherichia coli

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3264077

The H-NS-like protein StpA represses the RpoS (sigma 38) regulon during exponential growth of Salmonella Typhimurium.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3264077

Multiple redundant stress resistance mechanisms are induced in Salmonella enterica serovar Typhimurium in response to alteration of the intracellular environment via TLR4 signalling.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3264077

Modelling the growth of Clostridium perfringens during the cooling of bulk meat.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3264077

pH and monovalent cations regulate cytosolic free Ca(2 ) in E. coli

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3264077

Differential expression of NiFe uptake-type hydrogenase genes in Salmonella enterica serovar Typhimurium

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3264077

The role of ferritins in the physiology of Salmonella enterica sv. Typhimurium: a unique role for ferritin B in iron-sulphur cluster repair and virulence

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3264077

Global gene expression analysis of glucose overflow metabolism in Escherichia coli and reduction of aerobic acetate formation

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3264077

Synthesis-mediated release of a small RNA inhibitor of RNA polymerase.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3264077

Induction of a global stress response during the first step of Escherichia coli plate growth

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3264077

Nickel homeostasis in Escherichia coli - the rcnR-rcnA efflux pathway and its linkage to NikR function.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3264077

The bacterial signal molecule, ppGpp, mediates the environmental regulation of both the invasion and intracellular virulence gene programs of Salmonella

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3264077

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3264077

Genome-wide analyses reveal RNA polymerase II located upstream of genes poised for rapid response upon S. cerevisiae stationary phase exit

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3264077

Copper sensitivity of cueO mutants of Escherichia coli K-12 and the biochemical suppression of this phenotype.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3264077

Global transcription profiles and intracellular pH regulation measured in Bacillus licheniformis upon external pH upshifts

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3264077

Batch growth of Salmonella typhimurium LT2: stoichiometry and factors leading to cessation of growth

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3264077

The transition between different physiological states during balanced growth of Salmonella typhimurium

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3264077

Dependency on medium and temperature of cell size and chemical composition during balanced grown of Salmonella typhimurium

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3264077

Global iron-dependent gene regulation in Escherichia coli. A new mechanism for iron homeostasis.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3264077

The effect of abrupt shifts in temperature on the lag phase duration of Escherichia coli and Klebsiella oxytoca.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3264077

Genome-wide transcriptional changes during the lag phase of Saccharomyces cerevisiae

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3264077

The manganese and iron superoxide dismutases protect Escherichia coli from heavy metal toxicity.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3264077

Repair of oxidized proteins. Identification of a new methionine sulfoxide reductase

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3264077

cAMP-cAMP receptor protein complex: five binding sites in the control region of the Escherichia coli mannitol operon

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3264077

Identification of genes and proteins induced during the lag and early exponential phase of lager brewing yeasts

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3264077

Requirement for nickel of the transmembrane translocation of NiFe-hydrogenase 2 in Escherichia coli

28 October 2018

1 reference

12 December 2020

The two analogous phosphoglycerate mutases of Escherichia coli

1 reference

12 December 2020

Predictive model of the effect of temperature, pH and sodium chloride on growth from spores of non-proteolytic Clostridium botulinum

1 reference

12 December 2020

Predictive models of the effect of temperature, pH and acetic and lactic acids on the growth of Listeria monocytogenes

1 reference

12 December 2020

Predictive model of the effect of CO2, pH, temperature and NaCl on the growth of Listeria monocytogenes

1 reference

12 December 2020

Identifiers

DOI

10.1128/JB.06112-11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22139505 AND SRC:MED&resulttype=core&format=json

17 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22139505 AND SRC:MED&resulttype=core&format=json

17 January 2020

PubMed publication ID

22139505

1 reference