Preimplantation development regulatory pathway construction through a text-mining approach. (Q34173388)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22369103 AND SRC:MED&resulttype=core&format=json

24 January 2020

title

Preimplantation development regulatory pathway construction through a text-mining approach (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22369103 AND SRC:MED&resulttype=core&format=json

24 January 2020

1 reference

Adriano Barbosa-Silva

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22369103 AND SRC:MED&resulttype=core&format=json

24 January 2020

Miguel Andrade

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22369103 AND SRC:MED&resulttype=core&format=json

24 January 2020

1

Elisa Donnard

1 reference

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24 January 2020

author name string

Rafael L M Guedes

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22369103 AND SRC:MED&resulttype=core&format=json

24 January 2020

Gabriel R Fernandes

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22369103 AND SRC:MED&resulttype=core&format=json

24 January 2020

Henrique Velloso

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22369103 AND SRC:MED&resulttype=core&format=json

24 January 2020

Matthew J Kohn

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22369103 AND SRC:MED&resulttype=core&format=json

24 January 2020

J Miguel Ortega

8

1 reference

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24 January 2020

language of work or name

English

0 references

publication date

22 December 2011

1 reference

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24 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22369103 AND SRC:MED&resulttype=core&format=json

24 January 2020

volume

12 Suppl 4

1 reference

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24 January 2020

page(s)

S3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22369103 AND SRC:MED&resulttype=core&format=json

PESCADOR, a web-based tool to assist text-mining of biointeractions extracted from PubMed queries

24 January 2020

cites work

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Gata3 regulates trophoblast development downstream of Tead4 and in parallel to Cdx2.

5 July 2018

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5 July 2018

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5 July 2018

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Dax1 binds to Oct3/4 and inhibits its transcriptional activity in embryonic stem cells.

5 July 2018

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5 July 2018

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5 July 2018

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Active cell movements coupled to positional induction are involved in lineage segregation in the mouse blastocyst.

5 July 2018

1 reference

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The Hippo signaling pathway components Lats and Yap pattern Tead4 activity to distinguish mouse trophectoderm from inner cell mass

5 July 2018

1 reference

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Esrrb activates Oct4 transcription and sustains self-renewal and pluripotency in embryonic stem cells

5 July 2018

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Markers that define stemness in ESC are unable to identify the totipotent cells in human preimplantation embryos.

5 July 2018

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Sall4 regulates distinct transcription circuitries in different blastocyst-derived stem cell lineages.

5 July 2018

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5 July 2018

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T-cell factor 3 regulates embryonic stem cell pluripotency and self-renewal by the transcriptional control of multiple lineage pathways

5 July 2018

1 reference

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Identification of DPPA4 and other genes as putative Sox2:Oct-3/4 target genes using a combination of in silico analysis and transcription-based assays.

5 July 2018

1 reference

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Clustering of cognate proteins among distinct proteomes derived from multiple links to a single seed sequence

5 July 2018

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iPath: interactive exploration of biochemical pathways and networks

5 July 2018

1 reference

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Wnt6 induces the specification and epithelialization of F9 embryonal carcinoma cells to primitive endoderm.

5 July 2018

1 reference

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Cdx2 acts downstream of cell polarization to cell-autonomously promote trophectoderm fate in the early mouse embryo

5 July 2018

1 reference

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Towards completion of the Earth's proteome

5 July 2018

1 reference

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Sox17 plays a substantial role in late-stage differentiation of the extraembryonic endoderm in vitro

5 July 2018

1 reference

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A gene regulatory network in mouse embryonic stem cells

5 July 2018

1 reference

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Identification of novel stem cell markers using gap analysis of gene expression data.

5 July 2018

1 reference

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Conserved molecular portraits of bovine and human blastocysts as a consequence of the transition from maternal to embryonic control of gene expression

5 July 2018

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Suppression of ES cell differentiation by retinol (vitamin A) via the overexpression of Nanog

5 July 2018

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5 July 2018

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Sall4 modulates embryonic stem cell pluripotency and early embryonic development by the transcriptional regulation of Pou5f1

5 July 2018

1 reference

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Repression of Nanog gene transcription by Tcf3 limits embryonic stem cell self-renewal

5 July 2018

1 reference

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Esg1, expressed exclusively in preimplantation embryos, germline, and embryonic stem cells, is a putative RNA-binding protein with broad RNA targets

5 July 2018

1 reference

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Nanog binds to Smad1 and blocks bone morphogenetic protein-induced differentiation of embryonic stem cells

5 July 2018

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Cell and molecular regulation of the mouse blastocyst

5 July 2018

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The murine ortholog of notchless, a direct regulator of the notch pathway in Drosophila melanogaster, is essential for survival of inner cell mass cells

5 July 2018

1 reference

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Expression and subcellular localization of GSE protein in germ cells and preimplantation embryos

5 July 2018

1 reference

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An improved single-cell cDNA amplification method for efficient high-density oligonucleotide microarray analysis

5 July 2018

1 reference

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Roadmap to embryo implantation: clues from mouse models

5 July 2018

1 reference

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Expansion of the BioCyc collection of pathway/genome databases to 160 genomes

5 July 2018

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Primary differentiation in the human blastocyst: comparative molecular portraits of inner cell mass and trophectoderm cells

5 July 2018

1 reference

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Downregulation of NANOG induces differentiation of human embryonic stem cells to extraembryonic lineages

5 July 2018

1 reference

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Expression of all Wnt genes and their secreted antagonists during mouse blastocyst and postimplantation development

5 July 2018

1 reference

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Animal embryonic stem (ES) cells: self-renewal, pluripotency, transgenesis and nuclear transfer

5 July 2018

1 reference

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Cdx2 is required for correct cell fate specification and differentiation of trophectoderm in the mouse blastocyst

5 July 2018

1 reference

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Oct-3/4 and Sox2 regulate Oct-3/4 gene in embryonic stem cells

5 July 2018

1 reference

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Sox7 plays crucial roles in parietal endoderm differentiation in F9 embryonal carcinoma cells through regulating Gata-4 and Gata-6 expression

5 July 2018

1 reference

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Specific knockdown of Oct4 and beta2-microglobulin expression by RNA interference in human embryonic stem cells and embryonic carcinoma cells

5 July 2018

1 reference

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Lineage allocation and cell polarity during mouse embryogenesis.

5 July 2018

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5 July 2018

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A role for Id in the regulation of TGF-beta-induced epithelial-mesenchymal transdifferentiation

5 July 2018

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SOX7 and GATA-4 are competitive activators of Fgf-3 transcription

5 July 2018

1 reference

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5 July 2018

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OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

5 July 2018

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Disabled-2 is essential for endodermal cell positioning and structure formation during mouse embryogenesis

5 July 2018

1 reference

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Dual roles for the Dab2 adaptor protein in embryonic development and kidney transport

5 July 2018

1 reference

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A genomic regulatory network for development

5 July 2018

1 reference

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Taube nuss is a novel gene essential for the survival of pluripotent cells of early mouse embryos

5 July 2018

1 reference

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Genomic organization, chromosomal localization, and the complete 22 kb DNA sequence of the human GCMa/GCM1, a placenta-specific transcription factor gene

5 July 2018

1 reference

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Modulation of the activity of multiple transcriptional activation domains by the DNA binding domains mediates the synergistic action of Sox2 and Oct-3 on the fibroblast growth factor-4 enhancer

5 July 2018

1 reference

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KEGG: kyoto encyclopedia of genes and genomes

5 July 2018

1 reference

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BMP signaling plays a role in visceral endoderm differentiation and cavitation in the early mouse embryo.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287586

The Hand1 bHLH transcription factor is essential for placentation and cardiac morphogenesis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287586

Expression of transcription factor HNF-4 in the extraembryonic endoderm, gut, and nephrogenic tissue of the developing mouse embryo: HNF-4 is a marker for primary endoderm in the implanting blastocyst

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287586

Expression of c-MYC in nuclear speckles during mouse oocyte growth and preimplantation development

5 July 2018

1 reference

https://api.crossref.org/works/10.1186/1471-2164-12-S4-S3

Differential expression of the embryo/cancer gene ECSA(DPPA2), the cancer/testis gene BORIS and the pluripotency structural gene OCT4, in human preimplantation development

21 January 2018

1 reference

https://api.crossref.org/works/10.1186/1471-2164-12-S4-S3

Abnormal regulation of DNA methyltransferase expression in cloned mouse embryos

21 January 2018

1 reference

https://api.crossref.org/works/10.1186/1471-2164-12-S4-S3

5-AZA-2'-deoxycytidine (5-AZA-CdR) leads to down-regulation of Dnmt1o and gene expression in preimplantation mouse embryos.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186/1471-2164-12-S4-S3

Downregulation of Par3 and aPKC function directs cells towards the ICM in the preimplantation mouse embryo

21 January 2018

1 reference

https://api.crossref.org/works/10.1186/1471-2164-12-S4-S3

Analysis of Oct4-dependent transcriptional networks regulating self-renewal and pluripotency in human embryonic stem cells

21 January 2018

1 reference

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A core Klf circuitry regulates self-renewal of embryonic stem cells

21 January 2018

1 reference

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A negative feedback loop of transcription factors that controls stem cell pluripotency and self-renewal

21 January 2018

1 reference

https://api.crossref.org/works/10.1186/1471-2164-12-S4-S3

Adamantane/beta-cyclodextrin affinity biosensors based on single-walled carbon nanotubes

21 January 2018

1 reference

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Inner cell mass-specific expression of a cell adhesion molecule (PECAM-1/CD31) in the mouse blastocyst

21 January 2018

1 reference

https://api.crossref.org/works/10.1186/1471-2164-12-S4-S3

The anterior visceral endoderm of the mouse embryo is established from both preimplantation precursor cells and by de novo gene expression after implantation

21 January 2018

1 reference

https://api.crossref.org/works/10.1186/1471-2164-12-S4-S3

Nanog maintains pluripotency of mouse embryonic stem cells by inhibiting NFkappaB and cooperating with Stat3.

21 January 2018

1 reference

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Spatially precise DNA bending is an essential activity of the sox2 transcription factor

21 January 2018

1 reference

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OCT4 and NANOG are the key genes in the system of pluripotency maintenance in mammalian cells

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287586

Regulation of desmocollin transcription in mouse preimplantation embryos.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287586

A procedure to recruit members to enlarge protein family databases--the building of UECOG (UniRef-Enriched COG Database) as a model

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287586

Arp3 is required during preimplantation development of the mouse embryo

9 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22369103

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Retinoic acid-regulated expression of fibroblast growth factor 3 requires the interaction between a novel transcription factor and GATA-4

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22369103

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identification of mouse blastocyst genes that are downregulated by double-stranded RNA-mediated knockdown of Oct-4 expression

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22369103

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-12-S4-S3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22369103 AND SRC:MED&resulttype=core&format=json

24 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22369103 AND SRC:MED&resulttype=core&format=json

24 January 2020

PubMed publication ID

22369103

1 reference