Expanding the microRNA targeting code: functional sites with centered pairing (Q34125341)

31 July 2017

title

Expanding the microRNA targeting code: functional sites with centered pairing (English)

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31 July 2017

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2

Jin-Wu Nam

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31 July 2017

6

David P Bartel

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31 July 2017

Chanseok Shin

1

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31 July 2017

Kyle Kai-How Farh

series ordinal

3

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31 July 2017

H Rosaria Chiang

series ordinal

4

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31 July 2017

Alena Shkumatava

series ordinal

5

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31 July 2017

publication date

1 June 2010

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31 July 2017

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31 July 2017

volume

38

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31 July 2017

issue

6

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31 July 2017

page(s)

789-802

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Mammalian microRNAs: experimental evaluation of novel and previously annotated genes

31 July 2017

cites work

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5 July 2018

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miR-24 Inhibits cell proliferation by targeting E2F2, MYC, and other cell-cycle genes via binding to "seedless" 3'UTR microRNA recognition elements

5 July 2018

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Genome-wide identification of targets of the drosha-pasha/DGCR8 complex

5 July 2018

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MicroRNAs: target recognition and regulatory functions

5 July 2018

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Most mammalian mRNAs are conserved targets of microRNAs

5 July 2018

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Mouse ES cells express endogenous shRNAs, siRNAs, and other Microprocessor-independent, Dicer-dependent small RNAs

5 July 2018

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5 July 2018

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Cleavage of the star strand facilitates assembly of some microRNAs into Ago2-containing silencing complexes in mammals

5 July 2018

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Widespread changes in protein synthesis induced by microRNAs

5 July 2018

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The impact of microRNAs on protein output

5 July 2018

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Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends

5 July 2018

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Endogenous siRNA and miRNA targets identified by sequencing of the Arabidopsis degradome

5 July 2018

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Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight?

5 July 2018

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Molecular basis for target RNA recognition and cleavage by human RISC.

5 July 2018

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MicroRNA targeting specificity in mammals: determinants beyond seed pairing

5 July 2018

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Requirement of bic/microRNA-155 for normal immune function

5 July 2018

1 reference

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Structural features of the guide:target RNA duplex required for archaeal box C/D sRNA-guided nucleotide 2'-O-methylation

5 July 2018

1 reference

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Concentration, compartmentation and metabolic function of intracellular free Mg2 .

5 July 2018

1 reference

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Comparison of siRNA-induced off-target RNA and protein effects

5 July 2018

1 reference

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A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana

5 July 2018

1 reference

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Designing siRNA that distinguish between genes that differ by a single nucleotide

5 July 2018

1 reference

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Position-specific chemical modification of siRNAs reduces "off-target" transcript silencing

5 July 2018

1 reference

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Widespread siRNA "off-target" transcript silencing mediated by seed region sequence complementarity

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2942757

MicroRNAS and their regulatory roles in plants

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2942757

3' UTR seed matches, but not overall identity, are associated with RNAi off-targets

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2942757

Zebrafish MiR-430 promotes deadenylation and clearance of maternal mRNAs

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2942757

A large family of ancient repeat elements in the human genome is under strong selection

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2942757

A human, ATP-independent, RISC assembly machine fueled by pre-miRNA

5 July 2018

1 reference

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Animal MicroRNAs confer robustness to gene expression and have a significant impact on 3'UTR evolution

5 July 2018

1 reference

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The widespread impact of mammalian MicroRNAs on mRNA repression and evolution

5 July 2018

1 reference

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Slicer function of Drosophila Argonautes and its involvement in RISC formation

5 July 2018

1 reference

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Human RISC couples microRNA biogenesis and posttranscriptional gene silencing

5 July 2018

1 reference

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Argonaute2 cleaves the anti-guide strand of siRNA during RISC activation

5 July 2018

1 reference

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Silencing of microRNAs in vivo with 'antagomirs'

5 July 2018

1 reference

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microRNA-directed phasing during trans-acting siRNA biogenesis in plants

5 July 2018

1 reference

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Decay of mRNAs targeted by RISC requires XRN1, the Ski complex, and the exosome

5 July 2018

1 reference

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Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2942757

Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2942757

Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2942757

Argonaute2 is the catalytic engine of mammalian RNAi

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2942757

MicroRNA control of PHABULOSA in leaf development: importance of pairing to the microRNA 5' region

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2942757

Human Argonaute2 mediates RNA cleavage targeted by miRNAs and siRNAs

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2942757

Computational identification of plant microRNAs and their targets, including a stress-induced miRNA

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2942757

Kinetic analysis of the RNAi enzyme complex

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2942757

The RNA-induced silencing complex is a Mg2 -dependent endonuclease.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2942757

MicroRNA-directed cleavage of HOXB8 mRNA

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2942757

RISC is a 5' phosphomonoester-producing RNA endonuclease

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2942757

Aligning multiple genomic sequences with the threaded blockset aligner

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2942757

MicroRNAs: genomics, biogenesis, mechanism, and function

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2942757

Prediction of mammalian microRNA targets

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2942757

Expression profiling reveals off-target gene regulation by RNAi

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2942757

The microRNAs of Caenorhabditis elegans

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2942757

Cleavage of Scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2942757

A microRNA in a multiple-turnover RNAi enzyme complex

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2942757

Effects of magnesium ions on the stabilization of RNA oligomers of defined structures

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2942757

Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2942757

RNA interference is mediated by 21- and 22-nucleotide RNAs

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2942757

Experimental validation of the importance of seed complement frequency to siRNA specificity

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2942757

AtXRN4 degrades mRNA in Arabidopsis and its substrates include selected miRNA targets

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2942757

RNAi-Mediated Allelic trans-Interaction at the Imprinted Rtl1/Peg11 Locus

28 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20620952

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Distinct passenger strand and mRNA cleavage activities of human Argonaute proteins

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20620952

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.MOLCEL.2010.06.005

1 reference

31 July 2017

1 reference

31 July 2017

1 reference