Computational detection and location of transcription start sites in mammalian genomic DNA (Q34116765)

31 July 2017

title

Computational detection and location of transcription start sites in mammalian genomic DNA (English)

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31 July 2017

main subject

computational biology

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2

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31 July 2017

Thomas A Down

1

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31 July 2017

publication date

1 March 2002

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31 July 2017

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31 July 2017

volume

12

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31 July 2017

issue

3

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31 July 2017

page(s)

458-461

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SSAHA: a fast search method for large DNA databases

31 July 2017

cites work

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=155284

First pass annotation of promoters on human chromosome 22.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=155284

Functional annotation of a full-length mouse cDNA collection

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=155284

The hormone-sensitive lipase gene is transcribed from at least five alternative first exons in mouse adipose tissue

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=155284

Highly specific localization of promoter regions in large genomic sequences by PromoterInspector: a novel context analysis approach

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=155284

The eukaryotic promoter database (EPD).

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=155284

The DNA sequence of human chromosome 22

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=155284

Detection of eukaryotic promoters using Markov transition matrices.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=155284

Eukaryotic promoter recognition

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=155284

Meta-MEME: motif-based hidden Markov models of protein families

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=155284

Weight matrix descriptions of four eukaryotic RNA polymerase II promoter elements derived from 502 unrelated promoter sequences

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=155284

Promoter2.0: for the recognition of PolII promoter sequences.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=155284

Identification and functional modelling of DNA sequence elements of transcription

28 October 2018

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PubMed

https://pubmed.ncbi.nlm.nih.gov/11875034

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1101/GR.216102

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31 July 2017

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31 July 2017

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