Protein-protein interactions between sigma(70) region 4 of RNA polymerase and Escherichia coli SoxS, a transcription activator that functions by the prerecruitment mechanism: evidence for "off-DNA" and "on-DNA" interactions. (Q34051385)

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English	Protein-protein interactions between sigma(70) region 4 of RNA polymerase and Escherichia coli SoxS, a transcription activator that functions by the prerecruitment mechanism: evidence for "off-DNA" and "on-DNA" interactions.	scientific article

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6 February 2020

Protein-protein interactions between sigma(70) region 4 of RNA polymerase and Escherichia coli SoxS, a transcription activator that functions by the prerecruitment mechanism: evidence for "off-DNA" and "on-DNA" interactions (English)

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6 February 2020

protein-protein interaction

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based on heuristic

inferred from title

Escherichia coli

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based on heuristic

inferred from title

1

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6 February 2020

author name string

Ishita M Shah

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6 February 2020

Richard E Wolf

3

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2 June 2010

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6 February 2020

Journal of Molecular Biology

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6 February 2020

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6 February 2020

Accuracy modulating mutations of the ribosomal protein S4-S5 interface do not necessarily destabilize the rps4-rps5 protein-protein interaction.

1 reference

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Two functions of the C-terminal domain of Escherichia coli Rob: mediating "sequestration-dispersal" as a novel off-on switch for regulating Rob's activity as a transcription activator and preventing degradation of Rob by Lon protease

1 reference

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Analysis of mechanisms of activation and repression at bacterial promoters.

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Advances in bacterial promoter recognition and its control by factors that do not bind DNA.

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Genomic studies with Escherichia coli MelR protein: applications of chromatin immunoprecipitation and microarrays.

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Amino acid contacts between sigma 70 domain 4 and the transcription activators RhaS and RhaR.

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The regulation of bacterial transcription initiation

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A reducing system of the superoxide sensor SoxR in Escherichia coli

1 reference

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5 July 2018

Region 4 of sigma as a target for transcription regulation

1 reference

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Bacterial RNA polymerases: the wholo story

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Growing repertoire of AraC/XylS activators

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A comprehensive alanine scanning mutagenesis of the Escherichia coli transcriptional activator SoxS: identifying amino acids important for DNA binding and transcription activation

1 reference

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Structural basis of transcription activation: the CAP-alpha CTD-DNA complex

1 reference

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5 July 2018

Genomics of the marA/soxS/rob regulon of Escherichia coli: identification of directly activated promoters by application of molecular genetics and informatics to microarray data

1 reference

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Structural basis of transcription initiation: an RNA polymerase holoenzyme-DNA complex

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Posttranscriptional activation of the transcriptional activator Rob by dipyridyl in Escherichia coli

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5 July 2018

Genome-wide transcriptional profiling of the Escherichia coli responses to superoxide stress and sodium salicylate

1 reference

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5 July 2018

Transcription elongation complex: structure and function

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5 July 2018

Genetic evidence that transcription activation by RhaS involves specific amino acid contacts with sigma 70.

1 reference

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5 July 2018

Interactions between activating region 3 of the Escherichia coli cyclic AMP receptor protein and region 4 of the RNA polymerase sigma(70) subunit: application of suppression genetics.

1 reference

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5 July 2018

Differential expression of over 60 chromosomal genes in Escherichia coli by constitutive expression of MarA.

1 reference

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5 July 2018

Crystal structure of the Escherichia coli Rob transcription factor in complex with DNA

1 reference

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5 July 2018

Growth phase-dependent variation in protein composition of the Escherichia coli nucleoid

1 reference

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5 July 2018

Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 A resolution.

1 reference

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Repression of transcription initiation in bacteria.

1 reference

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Positive activation of gene expression

1 reference

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5 July 2018

The Escherichia coli Ada protein can interact with two distinct determinants in the sigma70 subunit of RNA polymerase according to promoter architecture: identification of the target of Ada activation at the alkA promoter

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2917807

5 July 2018

Identification of a contact site for different transcription activators in region 4 of the Escherichia coli RNA polymerase sigma70 subunit

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2917807

5 July 2018

A novel DNA-binding motif in MarA: the first structure for an AraC family transcriptional activator

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2917807

5 July 2018

Arac/XylS family of transcriptional regulators

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2917807

5 July 2018

Role of the acrAB locus in organic solvent tolerance mediated by expression of marA, soxS, or robA in Escherichia coli

1 reference

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5 July 2018

In vivo kinetics of a redox-regulated transcriptional switch

1 reference

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5 July 2018

Transcriptional activation by recruitment

1 reference

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5 July 2018

Organic solvent tolerance and antibiotic resistance increased by overexpression of marA in Escherichia coli

1 reference

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5 July 2018

Regulation of the soxRS oxidative stress regulon. Reversible oxidation of the Fe-S centers of SoxR in vivo

1 reference

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5 July 2018

The redox state of the [2Fe-2S] clusters in SoxR protein regulates its activity as a transcription factor.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2917807

5 July 2018

A rob-like gene of Enterobacter cloacae affecting porin synthesis and susceptibility to multiple antibiotics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2917807

5 July 2018

Multidrug efflux pumps of gram-negative bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2917807

5 July 2018

SoxR, a [2Fe-2S] transcription factor, is active only in its oxidized form

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2917807

5 July 2018

Transcriptional activation of promoters of the superoxide and multiple antibiotic resistance regulons by Rob, a binding protein of the Escherichia coli origin of chromosomal replication

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2917807

5 July 2018

Purification and regulatory properties of MarA protein, a transcriptional activator of Escherichia coli multiple antibiotic and superoxide resistance promoters

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2917807

5 July 2018

A novel binding protein of the origin of the Escherichia coli chromosome

1 reference

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5 July 2018

Genetic and functional analysis of the multiple antibiotic resistance (mar) locus in Escherichia coli

1 reference

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5 July 2018

A third recognition element in bacterial promoters: DNA binding by the alpha subunit of RNA polymerase

1 reference

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1 reference

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5 July 2018

Activation of multiple antibiotic resistance and binding of stress-inducible promoters by Escherichia coli Rob protein

1 reference

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5 July 2018

Purification of a MalE-SoxS fusion protein and identification of the control sites of Escherichia coli superoxide-inducible genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2917807

5 July 2018

Overexpression of the robA gene increases organic solvent tolerance and multiple antibiotic and heavy metal ion resistance in Escherichia coli.

1 reference

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5 July 2018

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1 reference

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5 July 2018

Factor Stimulating Transcription by RNA Polymerase

1 reference

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5 July 2018

Role of cyclic adenosine 3',5'-monophosphate and the cyclic adenosine 3',5'-monophosphate receptor protein in the initiation of lac transcription.

1 reference

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5 July 2018

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1 reference

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1 reference

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5 July 2018

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1 reference

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5 July 2018

Two divergently transcribed genes, soxR and soxS, control a superoxide response regulon of Escherichia coli

1 reference

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5 July 2018

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1 reference

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5 July 2018

Polypeptides containing highly conserved regions of transcription initiation factor σ70 exhibit specificity of binding to promoter DNA

1 reference

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Two-stage control of an oxidative stress regulon: the Escherichia coli SoxR protein triggers redox-inducible expression of the soxS regulatory gene

1 reference

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Two-stage induction of the soxRS (superoxide response) regulon of Escherichia coli

1 reference

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5 July 2018

Specific binding of CAP factor to lac promoter DNA

1 reference

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5 July 2018

Characterization of TetD as a transcriptional activator of a subset of genes of the Escherichia coli SoxS/MarA/Rob regulon

1 reference

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28 October 2018

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1 reference

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28 October 2018

Novel protein--protein interaction between Escherichia coli SoxS and the DNA binding determinant of the RNA polymerase alpha subunit: SoxS functions as a co-sigma factor and redeploys RNA polymerase from UP-element-containing promoters to SoxS-depen

1 reference

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28 October 2018

Versatility of the carboxy-terminal domain of the alpha subunit of RNA polymerase in transcriptional activation: use of the DNA contact site as a protein contact site for MarA.

1 reference

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28 October 2018

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1 reference

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28 October 2018

Studies of the Escherichia coli Rsd-sigma70 complex

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28 October 2018

Functional interaction between RNA polymerase alpha subunit C-terminal domain and sigma70 in UP-element- and activator-dependent transcription

1 reference

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28 October 2018

Bile salts and fatty acids induce the expression of Escherichia coli AcrAB multidrug efflux pump through their interaction with Rob regulatory protein.

1 reference

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28 October 2018

Complex formation between activator and RNA polymerase as the basis for transcriptional activation by MarA and SoxS in Escherichia coli.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2917807

28 October 2018

Evidence for "pre-recruitment" as a new mechanism of transcription activation in Escherichia coli: the large excess of SoxS binding sites per cell relative to the number of SoxS molecules per cell

1 reference

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28 October 2018

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28 October 2018

Promoter discrimination by the related transcriptional activators MarA and SoxS: differential regulation by differential binding.

1 reference

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28 October 2018

Ambidextrous transcriptional activation by SoxS: requirement for the C-terminal domain of the RNA polymerase alpha subunit in a subset of Escherichia coli superoxide-inducible genes

1 reference

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28 October 2018

Target of the transcriptional activation function of phage lambda cI protein

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28 October 2018

Characterization of the activating region of Escherichia coli catabolite gene activator protein (CAP). II. Role at Class I and class II CAP-dependent promoters.

1 reference

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28 October 2018

Two types of localization of the DNA-binding proteins within the Escherichia coli nucleoid

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Systematic mutagenesis of the DNA binding sites for SoxS in the Escherichia coli zwf and fpr promoters: identifying nucleotides required for DNA binding and transcription activation

1 reference

https://pubmed.ncbi.nlm.nih.gov/20595001

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Protein-protein and protein-DNA interactions of sigma70 region 4 involved in transcription activation by lambdacI

1 reference

https://pubmed.ncbi.nlm.nih.gov/20595001

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Interdependence of the position and orientation of SoxS binding sites in the transcriptional activation of the class I subset of Escherichia coli superoxide-inducible promoters

1 reference

https://pubmed.ncbi.nlm.nih.gov/20595001

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural requirements for marbox function in transcriptional activation of mar/sox/rob regulon promoters in Escherichia coli: sequence, orientation and spatial relationship to the core promoter

1 reference

https://pubmed.ncbi.nlm.nih.gov/20595001

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNA-binding determinants of the alpha subunit of RNA polymerase: novel DNA-binding domain architecture

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https://pubmed.ncbi.nlm.nih.gov/20595001

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Separation and Characterization of the Subunits of Ribonucleic Acid Polymerase

1 reference

https://pubmed.ncbi.nlm.nih.gov/20595001

12 December 2020

based on heuristic

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The minus 35-recognition region of Escherichia coli sigma 70 is inessential for initiation of transcription at an "extended minus 10" promoter

1 reference

https://pubmed.ncbi.nlm.nih.gov/20595001

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Localization of a sigma70 binding site on the N terminus of the Escherichia coli RNA polymerase beta' subunit

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1016/J.JMB.2010.05.052

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20595001 AND SRC:MED&resulttype=core&format=json

6 February 2020

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20595001 AND SRC:MED&resulttype=core&format=json

6 February 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20595001 AND SRC:MED&resulttype=core&format=json

6 February 2020

ResearchGate publication ID

0 references

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