Efficient characterization of high-dimensional parameter spaces for systems biology. (Q34020133)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21920040 AND SRC:MED&resulttype=core&format=json

12 February 2020

title

Efficient characterization of high-dimensional parameter spaces for systems biology (English)

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12 February 2020

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2

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12 February 2020

author name string

Elías Zamora-Sillero

1

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21920040 AND SRC:MED&resulttype=core&format=json

12 February 2020

Ariane Ibig

3

1 reference

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12 February 2020

Joerg Stelling

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21920040 AND SRC:MED&resulttype=core&format=json

12 February 2020

Andreas Wagner

5

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12 February 2020

publication date

15 September 2011

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12 February 2020

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12 February 2020

volume

5

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12 February 2020

page(s)

142

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21920040 AND SRC:MED&resulttype=core&format=json

Consistent robustness analysis (CRA) identifies biologically relevant properties of regulatory network models

12 February 2020

cites work

1 reference

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28 July 2018

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Architecture-dependent robustness and bistability in a class of genetic circuits.

28 July 2018

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'Glocal' robustness analysis and model discrimination for circadian oscillators

28 July 2018

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Systems biology: parameter estimation for biochemical models

28 July 2018

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Shape, size, and robustness: feasible regions in the parameter space of biochemical networks

28 July 2018

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Geometry and topology of parameter space: investigating measures of robustness in regulatory networks

28 July 2018

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Design principles of biochemical oscillators

28 July 2018

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Systems biology of the clock in Neurospora crassa

28 July 2018

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Robust, tunable biological oscillations from interlinked positive and negative feedback loops.

28 July 2018

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Universally sloppy parameter sensitivities in systems biology models

28 July 2018

1 reference

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Ordered phosphorylation governs oscillation of a three-protein circadian clock

28 July 2018

1 reference

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Optimization by Simulated Annealing

28 July 2018

1 reference

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A genetic network for the clock of Neurospora crassa.

28 July 2018

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Post-translational modifications regulate the ticking of the circadian clock.

28 July 2018

1 reference

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Extension of a genetic network model by iterative experimentation and mathematical analysis

28 July 2018

1 reference

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Robustness of cellular functions

28 July 2018

1 reference

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Modeling feedback loops of the Mammalian circadian oscillator

28 July 2018

1 reference

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Robustness properties of circadian clock architectures

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3201035

Statistical mechanical approaches to models with many poorly known parameters

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3201035

A quantitative description of membrane current and its application to conduction and excitation in nerve

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3201035

Sniffers, buzzers, toggles and blinkers: dynamics of regulatory and signaling pathways in the cell

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3201035

Quantifying robustness of biochemical network models

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3201035

An ensemble method for identifying regulatory circuits with special reference to the qa gene cluster of Neurospora crassa.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3201035

A reduced model clarifies the role of feedback loops and time delays in the Drosophila circadian oscillator

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3201035

Mechanisms of noise-resistance in genetic oscillators

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3201035

Robustness of circadian rhythms with respect to molecular noise

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3201035

A new approach to decoding life: systems biology

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3201035

Interlocked feedback loops contribute to the robustness of the Neurospora circadian clock

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3201035

Mop3 is an essential component of the master circadian pacemaker in mammals

28 July 2018

1 reference

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The segment polarity network is a robust developmental module

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3201035

Interconnected feedback loops in the Neurospora circadian system

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3201035

Robustness in simple biochemical networks

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3201035

Numerical analysis of a comprehensive model of M-phase control in Xenopus oocyte extracts and intact embryos.

28 July 2018

1 reference

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Molecular model for receptor-stimulated calcium spiking

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3201035

Robustness as a measure of plausibility in models of biochemical networks

28 July 2018

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Modeling the mammalian circadian clock: sensitivity analysis and multiplicity of oscillatory mechanisms.

21 January 2018

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Bifurcation analysis of a model of the budding yeast cell cycle

21 January 2018

1 reference

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Bifurcations in a mathematical model for circadian oscillations of clock genes

21 January 2018

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https://api.crossref.org/works/10.1186/1752-0509-5-142

How robust are switches in intracellular signaling cascades?

21 January 2018

1 reference

https://api.crossref.org/works/10.1186/1752-0509-5-142

Circuit topology and the evolution of robustness in two-gene circadian oscillators

21 January 2018

1 reference

https://api.crossref.org/works/10.1186/1752-0509-5-142

Building a cell cycle oscillator: hysteresis and bistability in the activation of Cdc2.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186/1752-0509-5-142

Robustness properties of apoptosis models with respect to parameter variations and intrinsic noise

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3201035

Circadian rhythms and molecular noise.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3201035

Bayesian error estimation in density-functional theory

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3201035

Modeling circadian oscillations with interlocking positive and negative feedback loops.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3201035

The statistical mechanics of complex signaling networks: nerve growth factor signaling

29 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21920040

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Chaos and birhythmicity in a model for circadian oscillations of the PER and TIM proteins in drosophila

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21920040

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1752-0509-5-142

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21920040 AND SRC:MED&resulttype=core&format=json

journals/bmcsb/Zamora-SilleroHISW11

12 February 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21920040 AND SRC:MED&resulttype=core&format=json

12 February 2020

PubMed publication ID

21920040

1 reference