Extensive and biased intergenomic nonreciprocal DNA exchanges shaped a nascent polyploid genome, Gossypium (cotton) (Q34016566)

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20 March 2020

title

Extensive and biased intergenomic nonreciprocal DNA exchanges shaped a nascent polyploid genome, Gossypium (cotton) (English)

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20 March 2020

1 reference

1 reference

7

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20 March 2020

Hui Guo

3

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20 March 2020

Heidrun Gundlach

4

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20 March 2020

Klaus Mayer

5

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20 March 2020

Daniel G. Peterson

6

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20 March 2020

9

Andrew H Paterson

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20 March 2020

author name string

Xiyin Wang

2

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20 March 2020

Peng W Chee

8

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20 March 2020

Hui Guo

1

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20 March 2020

language of work or name

English

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publication date

6 June 2014

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20 March 2020

number of pages

11

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inferred from page(s)

published in

Genetics

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20 March 2020

volume

197

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20 March 2020

issue

4

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20 March 2020

page(s)

1153-1163

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The genomic landscape of meiotic crossovers and gene conversions in Arabidopsis thaliana

20 March 2020

cites work

1 reference

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Function relaxation followed by diversifying selection after whole-genome duplication in flowering plants

5 July 2018

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Great majority of recombination events in Arabidopsis are gene conversion events

5 July 2018

1 reference

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Polyploidy and its effect on evolutionary success: old questions revisited with new tools

5 July 2018

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Types, levels and patterns of low-copy DNA sequence divergence, and phylogenetic implications, for Gossypium genome types

5 July 2018

1 reference

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Trans chromosomal methylation in Arabidopsis hybrids

5 July 2018

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Extensive chromosomal variation in a recently formed natural allopolyploid species, Tragopogon miscellus (Asteraceae).

5 July 2018

1 reference

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Analysis of Arabidopsis genome-wide variations before and after meiosis and meiotic recombination by resequencing Landsberg erecta and all four products of a single meiosis

5 July 2018

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A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

5 July 2018

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Primate CpG islands are maintained by heterogeneous evolutionary regimes involving minimal selection

5 July 2018

1 reference

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Homoeologous shuffling and chromosome compensation maintain genome balance in resynthesized allopolyploid Brassica napus

5 July 2018

1 reference

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Ancestral polyploidy in seed plants and angiosperms

5 July 2018

1 reference

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Changes in 24-nt siRNA levels in Arabidopsis hybrids suggest an epigenetic contribution to hybrid vigor

5 July 2018

1 reference

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Insights from the comparison of plant genome sequences

5 July 2018

1 reference

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Widespread gene conversion in centromere cores

5 July 2018

1 reference

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Sampling nucleotide diversity in cotton

5 July 2018

1 reference

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Biased gene conversion and the evolution of mammalian genomic landscapes

5 July 2018

1 reference

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The Sequence Alignment/Map format and SAMtools

5 July 2018

1 reference

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Fast and accurate short read alignment with Burrows-Wheeler transform

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4125390

Comparative inference of illegitimate recombination between rice and sorghum duplicated genes produced by polyploidization

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4125390

Plants with double genomes might have had a better chance to survive the Cretaceous-Tertiary extinction event

5 July 2018

1 reference

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Epigenetic reprogramming and small RNA silencing of transposable elements in pollen

5 July 2018

1 reference

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The Sorghum bicolor genome and the diversification of grasses

5 July 2018

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An epigenetic role for maternally inherited piRNAs in transposon silencing

5 July 2018

1 reference

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Extensive concerted evolution of rice paralogs and the road to regaining independence

5 July 2018

1 reference

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Gene conversion: mechanisms, evolution and human disease

5 July 2018

1 reference

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Transposable elements and the epigenetic regulation of the genome

5 July 2018

1 reference

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DNA double-strand break repair: from mechanistic understanding to cancer treatment

5 July 2018

1 reference

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Finely orchestrated movements: evolution of the ribosomal RNA genes

5 July 2018

1 reference

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Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia

5 July 2018

1 reference

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Gene-balanced duplications, like tetraploidy, provide predictable drive to increase morphological complexity

5 July 2018

1 reference

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New World tetraploid cottons contain Old World cytoplasm

5 July 2018

1 reference

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Multiple rounds of speciation associated with reciprocal gene loss in polyploid yeasts

5 July 2018

1 reference

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The human LINE-1 retrotransposon creates DNA double-strand breaks.

5 July 2018

1 reference

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Molecular characterization of Ph1 as a major chromosome pairing locus in polyploid wheat

5 July 2018

1 reference

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Buffering of crucial functions by paleologous duplicated genes may contribute cyclicality to angiosperm genome duplication

5 July 2018

1 reference

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The advantages and disadvantages of being polyploid

5 July 2018

1 reference

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Comparative physical mapping links conservation of microsynteny to chromosome structure and recombination in grasses

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4125390

Hybrid genome evolution by transposition.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4125390

Rapid subfunctionalization accompanied by prolonged and substantial neofunctionalization in duplicate gene evolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4125390

Conservation of the microstructure of genome segments in Brassica napus and its diploid relatives

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4125390

Organ-specific silencing of duplicated genes in a newly synthesized cotton allotetraploid

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4125390

A 3347-locus genetic recombination map of sequence-tagged sites reveals features of genome organization, transmission and evolution of cotton (Gossypium).

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4125390

Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4125390

Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4125390

Role of duplicate genes in genetic robustness against null mutations

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4125390

Gene loss, silencing and activation in a newly synthesized wheat allotetraploid.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4125390

The probability of preservation of a newly arisen gene duplicate

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4125390

Sequence elimination and cytosine methylation are rapid and reproducible responses of the genome to wide hybridization and allopolyploidy in wheat

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4125390

Allopolyploidy-induced rapid genome evolution in the wheat (Aegilops-Triticum) group

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4125390

Protein-coding genes are epigenetically regulated in Arabidopsis polyploids

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4125390

Chromosomal stability and the DNA double-stranded break connection

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4125390

The evolutionary fate and consequences of duplicate genes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4125390

The probability of duplicate gene preservation by subfunctionalization

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4125390

Undermethylation associated with retroelement activation and chromosome remodelling in an interspecific mammalian hybrid

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4125390

Dispersed Repetitive DNA Has Spread to New Genomes Since Polyploid Formation in Cotton

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4125390

Polyploid formation created unique avenues for response to selection in Gossypium (cotton)

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4125390

Rapid Elimination of Low-Copy DNA Sequences in Polyploid Wheat: A Possible Mechanism for Differentiation of Homoeologous Chromosomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4125390

Epigenetic silencing of RNA polymerase I transcription: a role for DNA methylation and histone modification in nucleolar dominance

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4125390

The hotspot conversion paradox and the evolution of meiotic recombination

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4125390

Transcriptional analysis of nucleolar dominance in polyploid plants: biased expression/silencing of progenitor rRNA genes is developmentally regulated in Brassica

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4125390

Rapid genome change in synthetic polyploids of Brassica and its implications for polyploid evolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4125390

Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4125390

Fugu genome analysis provides evidence for a whole-genome duplication early during the evolution of ray-finned fishes

29 October 2018

1 reference

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Rate variation among nuclear genes and the age of polyploidy in Gossypium

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4125390

Phenotypic instability and rapid gene silencing in newly formed arabidopsis allotetraploids.

29 October 2018

1 reference

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Primate evolution of an olfactory receptor cluster: diversification by gene conversion and recent emergence of pseudogenes

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4125390

Transcriptional activation of retrotransposons alters the expression of adjacent genes in wheat

29 October 2018

1 reference

12 December 2020

Interchromosomal Transfer of Epigenetic States in Ascobolus: Transfer of DNA Methylation Is Mechanistically Related to Homologous Recombination

1 reference

12 December 2020

Possible significances of duplication in evolution

1 reference

12 December 2020

The origins of eukaryotic gene structure

1 reference

12 December 2020

Rapid diversification of the cotton genus (Gossypium: Malvaceae) revealed by analysis of sixteen nuclear and chloroplast genes

1 reference

12 December 2020

10.1534/GENETICS.114.166124

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24907262 AND SRC:MED&resulttype=core&format=json

20 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24907262 AND SRC:MED&resulttype=core&format=json

20 March 2020

PubMed publication ID

24907262

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24907262 AND SRC:MED&resulttype=core&format=json