Microscopic reversibility of protein folding in molecular dynamics simulations of the engrailed homeodomain (Q34001026)

30 July 2017

title

Microscopic reversibility of protein folding in molecular dynamics simulations of the engrailed homeodomain (English)

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30 July 2017

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3

Valerie Daggett

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30 July 2017

Michelle E McCully

1

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30 July 2017

David A C Beck

series ordinal

2

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30 July 2017

language of work or name

English

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publication date

14 June 2008

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30 July 2017

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30 July 2017

volume

47

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30 July 2017

issue

27

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30 July 2017

page(s)

7079-7089

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The Principle of Microscopic Reversibility

30 July 2017

cites work

1 reference

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UCSF Chimera--a visualization system for exploratory research and analysis

28 July 2018

1 reference

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The complete folding pathway of a protein from nanoseconds to microseconds

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2905463

Protein folding and unfolding in microseconds to nanoseconds by experiment and simulation

28 July 2018

1 reference

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Mapping the interactions present in the transition state for unfolding/folding of FKBP12.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2905463

Engrailed homeodomain-DNA complex at 2.2 A resolution: a detailed view of the interface and comparison with other engrailed structures

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2905463

VMD: visual molecular dynamics

28 July 2018

1 reference

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Characterization of the transition state of protein unfolding by use of molecular dynamics: chymotrypsin inhibitor 2

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2905463

Crystal structure of an engrailed homeodomain-DNA complex at 2.8 A resolution: a framework for understanding homeodomain-DNA interactions

28 July 2018

1 reference

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A one-dimensional reaction coordinate for identification of transition states from explicit solvent P(fold)-like calculations

28 July 2018

1 reference

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Direct observation of microscopic reversibility in single-molecule protein folding

29 October 2018

1 reference

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Sensitivity of the folding/unfolding transition state ensemble of chymotrypsin inhibitor 2 to changes in temperature and solvent

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2905463

Cutoff size need not strongly influence molecular dynamics results for solvated polypeptides

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2905463

Diffusing and colliding: the atomic level folding/unfolding pathway of a small helical protein

29 October 2018

1 reference

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Methods for molecular dynamics simulations of protein folding/unfolding in solution

29 October 2018

1 reference

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Unifying features in protein-folding mechanisms

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2905463

The denatured state of Engrailed Homeodomain under denaturing and native conditions

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2905463

Increasing temperature accelerates protein unfolding without changing the pathway of unfolding

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2905463

Molecular dynamics simulation of the unfolding of barnase: characterization of the major intermediate 1 1Edited by A. R. Fersht

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2905463

Structure of the transition state for folding of a protein derived from experiment and simulation

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2905463

The Structure of the Transition State for Folding of Chymotrypsin Inhibitor 2 Analysed by Protein Engineering Methods: Evidence for a Nucleation-condensation Mechanism for Protein Folding

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2905463

Exploring the energy surface of protein folding by structure-reactivity relationships and engineered proteins: observation of Hammond behavior for the gross structure of the transition state and anti-Hammond behavior for structural elements for unfo

29 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18553935

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Structure of the hydrophobic core in the transition state for folding of chymotrypsin inhibitor 2: a critical test of the protein engineering method of analysis

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18553935

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Glossary of terms used in theoretical organic chemistry

1 reference

20 August 2023

https://opencitations.net/index/coci/api/v1/citations/10.1351/PAC199971101919

Identifiers

DOI

10.1021/BI800118B

1 reference

30 July 2017

1 reference

30 July 2017

1 reference