Natural epigenetic polymorphisms lead to intraspecific variation in Arabidopsis gene imprinting. (Q33972669)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24994762 AND SRC:MED&resulttype=core&format=json

21 March 2020

title

Natural epigenetic polymorphisms lead to intraspecific variation in Arabidopsis gene imprinting (English)

1 reference

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21 March 2020

main subject

intraspecific variation

1 reference

2

1 reference

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Colette Lafontaine Picard

21 March 2020

4

1 reference

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21 March 2020

author name string

Daniela Pignatta

1

1 reference

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21 March 2020

Elias Scheer

3

1 reference

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21 March 2020

George W Bell

5

1 reference

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21 March 2020

Mary Gehring

6

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21 March 2020

language of work or name

English

0 references

publication date

3 July 2014

1 reference

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21 March 2020

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21 March 2020

volume

3

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21 March 2020

page(s)

e03198

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maintained by WikiProject

21 March 2020

1 reference

Comprehensive analysis of imprinted genes in maize reveals allelic variation for imprinting and limited conservation with other species

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115658

Genome-wide high resolution parental-specific DNA and histone methylation maps uncover patterns of imprinting regulation in maize

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115658

Dynamic expression of imprinted genes associates with maternally controlled nutrient allocation during maize endosperm development.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115658

Genomic imprinting: insights from plants

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115658

RNA-directed DNA methylation regulates parental genomic imprinting at several loci in Arabidopsis.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115658

Paternally expressed genes predominate in the placenta.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115658

Kin conflict in seed development: an interdependent but fractious collective

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115658

Imprinted expression of genes and small RNA is associated with localized hypomethylation of the maternal genome in rice endosperm

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115658

Transposon variants and their effects on gene expression in Arabidopsis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115658

Comprehensive developmental profiles of gene activity in regions and subregions of the Arabidopsis seed.

5 July 2018

1 reference

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'Leveling' the playing field for analyses of single-base resolution DNA methylomes.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115658

Reprogramming of DNA methylation in pollen guides epigenetic inheritance via small RNA

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115658

Active DNA demethylation in plant companion cells reinforces transposon methylation in gametes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115658

Evolution, function, and regulation of genomic imprinting in plant seed development.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115658

Critical evaluation of imprinted gene expression by RNA-Seq: a new perspective

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115658

Epigenetic Mechanisms Underlying Genomic Imprinting in Plants

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115658

Extensive, clustered parental imprinting of protein-coding and noncoding RNAs in developing maize endosperm

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115658

CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115658

Transgenerational epigenetic instability is a source of novel methylation variants

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115658

Multiple reference genomes and transcriptomes for Arabidopsis thaliana

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115658

Genomic analysis of parent-of-origin allelic expression in Arabidopsis thaliana seeds

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115658

A genome-wide survey of imprinted genes in rice seeds reveals imprinting primarily occurs in the endosperm

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115658

High-resolution analysis of parent-of-origin allelic expression in the Arabidopsis Endosperm

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115658

Genome-wide evidence for local DNA methylation spreading from small RNA-targeted sequences in Arabidopsis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115658

Function of the DEMETER DNA glycosylase in the Arabidopsis thaliana male gametophyte

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115658

Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115658

Dynamic regulation of H3K27 trimethylation during Arabidopsis differentiation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115658

Regulation of imprinted gene expression in Arabidopsis endosperm.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115658

Transposable elements and small RNAs contribute to gene expression divergence between Arabidopsis thaliana and Arabidopsis lyrata

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115658

Establishing, maintaining and modifying DNA methylation patterns in plants and animals

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115658

Phytochrome B and histone deacetylase 6 control light-induced chromatin compaction in Arabidopsis thaliana

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115658

Induction of RNA-directed DNA methylation upon decondensation of constitutive heterochromatin

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115658

Genome-wide demethylation of Arabidopsis endosperm.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115658

Extensive demethylation of repetitive elements during seed development underlies gene imprinting

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115658

Epigenetic silencing of transposable elements: a trade-off between reduced transposition and deleterious effects on neighboring gene expression

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115658

TopHat: discovering splice junctions with RNA-Seq

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115658

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115658

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115658

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115658

Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115658

Kismeth: analyzer of plant methylation states through bisulfite sequencing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115658

Highly integrated single-base resolution maps of the epigenome in Arabidopsis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115658

Transposable elements and the epigenetic regulation of the genome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115658

Dependence of the R-mottled aleurone phenotype in maize on mode of sexual transmission.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115658

DEMETER DNA glycosylase establishes MEDEA polycomb gene self-imprinting by allele-specific demethylation.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115658

The pattern of polymorphism in Arabidopsis thaliana

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115658

Physiological functions of imprinted genes.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115658

Genomic imprinting in plants: observations and evolutionary implications

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115658

Natural allelic variation at seed size loci in relation to other life history traits of Arabidopsis thaliana.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115658

Paramutation of the r1 Locus of Maize Is Associated With Increased Cytosine Methylation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4115658

Spontaneous epigenetic variation in the Arabidopsis thaliana methylome

5 July 2018

1 reference

Whole-genome sequencing of multiple Arabidopsis thaliana populations

21 January 2018

1 reference

Plant formin AtFH5 is an evolutionarily conserved actin nucleator involved in cytokinesis.

21 January 2018

1 reference

DNA methylation dynamics during sexual reproduction in Arabidopsis thaliana

21 January 2018

1 reference

Genetic analysis of two OsLpa1-like genes in Arabidopsis reveals that only one is required for wild-type seed phytic acid levels

21 January 2018

1 reference

An imprinted gene underlies postzygotic reproductive isolation in Arabidopsis thaliana.

21 January 2018

1 reference

Uniparental expression of PolIV-dependent siRNAs in developing endosperm of Arabidopsis

21 January 2018

1 reference

Patterns of population epigenomic diversity.

21 January 2018

1 reference

Light-regulated large-scale reorganization of chromatin during the floral transition in Arabidopsis

21 January 2018

1 reference

Parent-of-origin effects on gene expression and DNA methylation in the maize endosperm

21 January 2018

1 reference

Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription.

21 January 2018

1 reference

The Botany Array Resource: e-Northerns, Expression Angling, and promoter analyses

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24994762

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.7554/ELIFE.03198

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24994762 AND SRC:MED&resulttype=core&format=json

21 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24994762 AND SRC:MED&resulttype=core&format=json

21 March 2020

PubMed publication ID

24994762

1 reference