Functional recognition of the modified human tRNALys3(UUU) anticodon domain by HIV's nucleocapsid protein and a peptide mimic (Q33962718)

30 July 2017

title

Functional recognition of the modified human tRNALys3(UUU) anticodon domain by HIV's nucleocapsid protein and a peptide mimic (English)

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30 July 2017

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10

Piotr Mucha

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30 July 2017

William D Graham

1

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30 July 2017

Lise Barley-Maloney

2

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30 July 2017

Caren J Stark

3

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30 July 2017

Amarpreet Kaur

4

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30 July 2017

Christina Stolarchuk

5

1 reference

30 July 2017

Brian Sproat

6

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30 July 2017

Grazyna Leszczynska

7

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30 July 2017

Andrzej Malkiewicz

8

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30 July 2017

Nedal Safwat

9

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30 July 2017

Richard Guenther

11

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30 July 2017

Paul F Agris

12

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30 July 2017

language of work or name

English

0 references

publication date

1 July 2011

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Journal of Molecular Biology

30 July 2017

published in

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30 July 2017

volume

410

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30 July 2017

issue

4

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30 July 2017

page(s)

698-715

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Initiation of HIV Reverse Transcription

30 July 2017

cites work

1 reference

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Role of HIV-1 nucleocapsid protein in HIV-1 reverse transcription

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28 July 2018

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28 July 2018

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Water, shape recognition, salt bridges, and cation-pi interactions differentiate peptide recognition of the HIV rev-responsive element

28 July 2018

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Simultaneous recognition of HIV-1 TAR RNA bulge and loop sequences by cyclic peptide mimics of Tat protein

28 July 2018

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The structure of the human tRNALys3 anticodon bound to the HIV genome is stabilized by modified nucleosides and adjacent mismatch base pairs

28 July 2018

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Site-specific characterization of HIV-1 nucleocapsid protein binding to oligonucleotides with two binding sites

28 July 2018

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28 July 2018

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A new TAG-72 cancer marker peptide identified by phage display

28 July 2018

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RNA recognition motifs: boring? Not quite

28 July 2018

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High-throughput SHAPE analysis reveals structures in HIV-1 genomic RNA strongly conserved across distinct biological states

28 July 2018

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Structural probing of the HIV-1 polypurine tract RNA:DNA hybrid using classic nucleic acid ligands

28 July 2018

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tRNA's modifications bring order to gene expression

28 July 2018

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Nucleocapsid protein function in early infection processes

28 July 2018

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Circular dichroism and its application to the study of biomolecules.

28 July 2018

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Mutational analysis of the C-terminal gag cleavage sites in human immunodeficiency virus type 1

28 July 2018

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Probing nucleation, reverse annealing, and chaperone function along the reaction path of HIV-1 single-strand transfer

28 July 2018

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Specificity of phage display selected peptides for modified anticodon stem and loop domains of tRNA.

28 July 2018

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Assembly of the archaeal box C/D sRNP can occur via alternative pathways and requires temperature-facilitated sRNA remodeling

28 July 2018

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Nucleic acid chaperone activity of HIV-1 nucleocapsid protein: critical role in reverse transcription and molecular mechanism

28 July 2018

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Analysis of nucleic acids by FTICR MS.

28 July 2018

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The chaperoning and assistance roles of the HIV-1 nucleocapsid protein in proviral DNA synthesis and maintenance

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3662833

Anticodon domain methylated nucleosides of yeast tRNA(Phe) are significant recognition determinants in the binding of a phage display selected peptide

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3662833

Incorporation of lysyl-tRNA synthetase into human immunodeficiency virus type 1

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3662833

Two alternating structures of the HIV-1 leader RNA

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3662833

Functional anticodon architecture of human tRNALys3 includes disruption of intraloop hydrogen bonding by the naturally occurring amino acid modification, t6A

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3662833

Zinc finger structures in the human immunodeficiency virus type 1 nucleocapsid protein facilitate efficient minus- and plus-strand transfer

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3662833

NMR structure of the HIV-1 nucleocapsid protein bound to stem-loop SL2 of the psi-RNA packaging signal. Implications for genome recognition

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3662833

Structural and functional roles of the N1- and N3-protons of psi at tRNA's position 39

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3662833

28 July 2018

RNA-protein complexes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3662833

Transfer RNA modification: influence on translational frameshifting and metabolism

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3662833

Intra-tRNA distance measurements for nucleocapsid proteindependent tRNA unwinding during priming of HIV reverse transcription

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3662833

Stabilization of the anticodon stem-loop of tRNALys,3 by an A -C base-pair and by pseudouridine

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3662833

Detection of human immunodeficiency virus type 1 nucleocapsid protein p7 in vitro and in vivo.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3662833

Dynamical behavior of the HIV-1 nucleocapsid protein

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3662833

Sequence-Specific Binding of Human Immunodeficiency Virus Type 1 Nucleocapsid Protein to Short Oligonucleotides

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3662833

Primer tRNAs for reverse transcription

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3662833

Aminoacyl-tRNA synthetases in biology and disease: new evidence for structural and functional diversity in an ancient family of enzymes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3662833

The crystal structures of T. thermophilus lysyl-tRNA synthetase complexed with E. coli tRNA(Lys) and a T. thermophilus tRNA(Lys) transcript: anticodon recognition and conformational changes upon binding of a lysyl-adenylate analogue

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3662833

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3662833

The importance of being modified: roles of modified nucleosides and Mg2 in RNA structure and function.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3662833

Identification of tRNAs incorporated into wild-type and mutant human immunodeficiency virus type 1

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3662833

Interactions between HIV-1 nucleocapsid protein and viral DNA may have important functions in the viral life cycle

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3662833

Conformational behaviour of the active and inactive forms of the nucleocapsid NCp7 of HIV-1 studied by 1H NMR.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3662833

Incorporation of excess wild-type and mutant tRNA(3Lys) into human immunodeficiency virus type 1.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3662833

Human immunodeficiency virus type 1 can use different tRNAs as primers for reverse transcription but selectively maintains a primer binding site complementary to tRNA(3Lys)

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3662833

tRNAs as primer of reverse transcriptases

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3662833

Modified nucleotides of tRNA(3Lys) modulate primer/template loop-loop interaction in the initiation complex of HIV-1 reverse transcription

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3662833

Total chemical synthesis of a 77-nucleotide-long RNA sequence having methionine-acceptance activity

28 July 2018

1 reference

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Complete nucleotide sequence of the AIDS virus, HTLV-III

28 July 2018

1 reference

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Recombinant human immunodeficiency virus type 1 nucleocapsid (NCp7) protein unwinds tRNA

28 July 2018

1 reference

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Single-molecule stretching studies of RNA chaperones.

28 July 2018

1 reference

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Effects of the nature and concentration of salt on the interaction of the HIV-1 nucleocapsid protein with SL3 RNA.

29 October 2018

1 reference

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tRNA's wobble decoding of the genome: 40 years of modification

29 October 2018

1 reference

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Dissecting the protein-RNA and RNA-RNA interactions in the nucleocapsid-mediated dimerization and isomerization of HIV-1 stemloop 1.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3662833

Direct mass spectrometric determination of the stoichiometry and binding affinity of the complexes between nucleocapsid protein and RNA stem-loop hairpins of the HIV-1 Psi-recognition element

29 October 2018

1 reference

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HIV-1 NCp7 as a target for the design of novel antiviral agents.

29 October 2018

1 reference

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Accurate translation of the genetic code depends on tRNA modified nucleosides.

29 October 2018

1 reference

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HIV-1 nucleocapsid protein zinc finger structures induce tRNA(Lys,3) structural changes but are not critical for primer/template annealing

29 October 2018

1 reference

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Modified nucleoside dependent Watson-Crick and wobble codon binding by tRNALysUUU species

29 October 2018

1 reference

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Experimental models of protein-RNA interaction: isolation and analyses of tRNA(Phe) and U1 snRNA-binding peptides from bacteriophage display libraries

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3662833

Binding properties of the human immunodeficiency virus type 1 nucleocapsid protein p7 to a model RNA: elucidation of the structural determinants for function

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3662833

Single atom modification (O-->S) of tRNA confers ribosome binding.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3662833

HIV-1 gag proteins: diverse functions in the virus life cycle

29 October 2018

1 reference

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Structure of the HIV-1 nucleocapsid protein bound to the SL3 psi-RNA recognition element

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3662833

Charged amino acid residues of human immunodeficiency virus type 1 nucleocapsid p7 protein involved in RNA packaging and infectivity.

29 October 2018

1 reference

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Identification of a Src SH3 domain binding motif by screening a random phage display library.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3662833

Binding of the HIV-1 nucleocapsid protein to the primer tRNA(3Lys), in vitro, is essentially not specific

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3662833

Site-selected introduction of modified purine and pyrimidine ribonucleosides into RNA by automated phosphoramidite chemistry.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3662833

Nucleotide sequence of the AIDS virus, LAV

29 October 2018

1 reference

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New insights into the formation of HIV-1 reverse transcription initiation complex

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3662833

Stem-loop SL4 of the HIV-1 Ψ RNA packaging signal exhibits weak affinity for the nucleocapsid protein. structural studies and implications for genome recognition

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3662833

Heteronuclear NMR studies of the interaction of tRNA3Lys with HIV-1 nucleocapsid protein11Edited by M. F. Summers

29 October 2018

1 reference

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RNA oligonucleotide synthesis via 5'-silyl-2'-orthoester chemistry

29 October 2018

1 reference

12 December 2020

Analysis of the Interactions of HIV1 Replication Primer tRNALys,3 with Nucleocapsid Protein and Reverse Transcriptase

1 reference

12 December 2020

Purification of transfer RNA species by single-step ion-exchange high-performance liquid chromatography

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12 December 2020

Involvement of the anticodon region of Escherichia coli tRNAGln and tRNAGlu in the specific interaction with cognate aminoacyl-tRNA synthetase. Alteration of the 2-thiouridine derivatives located in the anticodon of the tRNAs by BrCN or sulfur depri

1 reference

12 December 2020

Mechanistic studies of mini-TAR RNA/DNA annealing in the absence and presence of HIV-1 nucleocapsid protein

1 reference

12 December 2020

HIV nucleocapsid protein. Expression in Escherichia coli, purification, and characterization

1 reference

12 December 2020

Effect of modified nucleotides on Escherichia coli tRNAGlu structure and on its aminoacylation by glutamyl-tRNA synthetase. Predominant and distinct roles of the mnm5 and s2 modifications of U34

1 reference

12 December 2020

No tRNA3Lys unwinding in a complex with HIV NCp7

1 reference

12 December 2020

Quantitative enzymatic hydrolysis of tRNAs: reversed-phase high-performance liquid chromatography of tRNA nucleosides

1 reference

12 December 2020

Specific recognition of primer tRNALys3 by HIV-1 nucleocapsid protein: involvement of the zinc fingers and the N-terminal basic extension

1 reference

12 December 2020

10.1016/J.JMB.2011.04.025

Identifiers

DOI

1 reference

30 July 2017

1 reference

30 July 2017

1 reference