Fluorescence assays to study structure, dynamics, and function of RNA and RNA-ligand complexes (Q33928757)

30 July 2017

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title

Fluorescence assays to study structure, dynamics, and function of RNA and RNA-ligand complexes (English)

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30 July 2017

Walter NG

1

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30 July 2017

Burke JM

series ordinal

2

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30 July 2017

language of work or name

English

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publication date

1 January 2000

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30 July 2017

published in

Methods in Enzymology

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30 July 2017

volume

317

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30 July 2017

page(s)

409-440

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Proteins that glow in green and blue

30 July 2017

cites work

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Fluorescence anisotropy applied to biomolecular interactions.

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Fluorescence resonance energy transfer

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Time-resolved fluorescence spectroscopy

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Time-resolved fluorescence spectroscopy

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Fluorescence spectrometry in studies of carbohydrate-protein interactions

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Measuring protein-protein interactions.

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Advances in transient-state kinetics

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Kinetics of acyl transfer ribonucleic acid complexes of Escherichia coli phenylalanyl-tRNA synthetase. A conformational change is rate limiting in catalysis

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Binding stoichiometry of tRNATrp and tryptophanyl-tRNA synthetase from bovine pancreas under pH conditions of maximum activity. Analysis by ultracentrifugation, fluorescence quenching and chemical modification

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Interactions between Escherichia coli arginyl-tRNA synthetase and its substrates

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Binding of the HIV-1 nucleocapsid protein to the primer tRNA(3Lys), in vitro, is essentially not specific

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Evaluation of human immunodeficiency virus type 1 reverse transcriptase primer tRNA binding by fluorescence spectroscopy: specificity and comparison to primer/template binding

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Structural Dynamics of HIV-1 Rev and Its Complexes with RRE and 5S RNA

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Fluorescence methods for studying kinetics of protein-folding reactions

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Spectrofluorometer based on acousto-optic tunable filters for rapid scanning and multicomponent sample analyses.

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Construction and performance of a rapid scan monochromator for multiwavelength fluorimetry

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

New looks and outlooks on physical enzymology

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Kinetics of conformational changes in tRNAPhe (yeast) as studied by the fluorescence of the y-base and of formycin substituted for the 3'-terminal adenine

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Multistep mechanism of codon recognition by transfer ribonucleic acid

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Fluorescence correlations, single molecule detection and large number screening. Applications in biotechnology

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Quantitative hybridization kinetics of DNA probes to RNA in solution followed by diffusional fluorescence correlation analysis

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

New assay technologies for high-throughput screening

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

The chemical-biological interface: developments in automated and miniaturised screening technology

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Accessing genetic information with high-density DNA arrays.

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Genome-wide expression monitoring in Saccharomyces cerevisiae

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Emission spectra from synthetic polynucleotides and deoxyribonucleic acid in aqueous solutions

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Minor conformational changes of yeast tRNAPhe anticodon loop occur upon aminoacylation as indicated by Y base fluorescence

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Topological arrangement of two transfer RNAs on the ribosome. Fluorescence energy transfer measurements between A and P site-bound tRNAphe

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Anticodon loop of tRNAPhe: structure, dynamics, and Mg2 binding

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Conformational dynamics of the anticodon loop in yeast tRNAPhe as sensed by the fluorescence of wybutine

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Detection of three rotational correlation times for a rigid asymmetric molecule using frequency-domain fluorometry.

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

The three conformations of the anticodon loop of yeast tRNA(Phe)

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Chemical nucleic acid synthesis, modification and labelling

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Large-scale oligoribonucleotide production

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Covalent labeling of proteins and nucleic acids with fluorophores

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Non-radioactive analysis of biomolecules

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Enzymatic labeling of nucleic acids

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

An Efficient Method for the Isolation and Purification of Oligoribonucleotides

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Mg(2 )-dependent conformational changes in the hammerhead ribozyme

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Ribozyme catalysis from the major groove of group II intron domain 5.

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Fluorescence studies of DNA and RNA structure and dynamics

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Melting of a DNA helix terminus within the active site of a DNA polymerase

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Molecular beacons: probes that fluoresce upon hybridization

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Fluorescence characteristics of 5-carboxytetramethylrhodamine linked covalently to the 5' end of oligonucleotides: multiple conformers of single-stranded and double-stranded dye-DNA complexes

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Single-turnover kinetics of helicase-catalyzed DNA unwinding monitored continuously by fluorescence energy transfer.

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Stability, specificity and fluorescence brightness of multiply-labeled fluorescent DNA probes

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Progress Toward the Structure and Therapeutic Use of the Hairpin Ribozyme

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

The hairpin ribozyme: structure, assembly and catalysis

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Stopped-flow fluorescence spectroscopy of a group II intron ribozyme reveals that domain 1 is an independent folding unit with a requirement for specific Mg2 ions in the tertiary structure

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Dynamics of ribozyme binding of substrate revealed by fluorescence-detected stopped-flow methods

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Effects of Mg2 and the 2‘ OH of Guanosine on Steps Required for Substrate Binding and Reactivity with the Tetrahymena Ribozyme Reveal Several Local Folding Transitions

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Fluorescence resonance energy transfer and nucleic acids

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Resonance energy transfer: methods and applications

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Fluorescence resonance energy transfer

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Fluorescence resonance energy transfer spectroscopy is a reliable "ruler" for measuring structural changes in proteins. Dispelling the problem of the unknown orientation factor.

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Fluorescence resonance energy transfer as a probe of DNA structure and function

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

A three-dimensional model for the hammerhead ribozyme based on fluorescence measurements

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Ion-induced folding of the hammerhead ribozyme: afluorescence resonance energy transfer study

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Folding of the hairpin ribozyme in its natural conformation achieves close physical proximity of the loops

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Structure and activity of the hairpin ribozyme in its natural junction conformation: effect of metal ions

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Global structure of four-way RNA junctions studied using fluorescence resonance energy transfer

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Tertiary structure formation in the hairpin ribozyme monitored by fluorescence resonance energy transfer

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Fluorescence resonance energy transfer analysis of ribozyme kinetics reveals the mode of action of a facilitator oligonucleotide

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Conformational distributions of a four-way DNA junction revealed by time-resolved fluorescence resonance energy transfer.

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Stability of hairpin ribozyme tertiary structure is governed by the interdomain junction

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

RNA aptamers that bind flavin and nicotinamide redox cofactors

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

RNA molecules that specifically and stoichiometrically bind aminoglycoside antibiotics with high affinities

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Specificity of aminoglycoside binding to RNA constructs derived from the 16S rRNA decoding region and the HIV-RRE activator region

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Inhibition of the Hammerhead Ribozyme Cleavage Reaction by Site-Specific Binding of Tb(III)

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Time-resolved europium(III) excitation spectroscopy: a luminescence probe of metal ion binding sites

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Characterization of Lanthanide Ion Binding to the EF-Hand Protein S100β by Luminescence Spectroscopy

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Probing RNA-protein interactions using pyrene-labeled oligodeoxynucleotides: Qbeta replicase efficiently binds small RNAs by recognizing pyrimidine residues

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Fluorescence methods for studying equilibrium macromolecule-ligand interactions

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

Rapid-scanning stopped-flow spectrophotometry

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(00)17027-2

7 January 2021

10.1016/S0076-6879(00)17027-2

Identifiers

DOI

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30 July 2017

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