qSVA framework for RNA quality correction in differential expression analysis (Q33886945)

29 July 2017

title

qSVA framework for RNA quality correction in differential expression analysis (English)

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29 July 2017

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13

Daniel R Weinberger

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29 July 2017

Andrew E Jaffe

1

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Jeffrey T. Leek

12

object named as

Jeffrey T Leek

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29 July 2017

5

Abhinav Nellore

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29 July 2017

Ran Tao

2

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Alexis L Norris

3

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29 July 2017

Marc Kealhofer

4

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29 July 2017

Joo Heon Shin

6

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29 July 2017

Dewey Kim

7

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29 July 2017

Yankai Jia

8

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Thomas M Hyde

9

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Joel E Kleinman

10

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Richard E Straub

11

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29 July 2017

language of work or name

English

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publication date

20 June 2017

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Proceedings of the National Academy of Sciences of the United States of America

29 July 2017

published in

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29 July 2017

volume

114

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29 July 2017

issue

27

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29 July 2017

page(s)

7130-7135

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describes a project that uses

29 July 2017

limma

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22 June 2022

https://europepmc.org/article/PMC/5502589

based on heuristic

inferred from PubMed Central ID database lookup

cites work

Gene expression elucidates functional impact of polygenic risk for schizophrenia

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5502589

Measure transcript integrity using RNA-seq data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5502589

Postmortem human brain genomics in neuropsychiatric disorders--how far can we go?

5 July 2018

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Mapping DNA methylation across development, genotype and schizophrenia in the human frontal cortex

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5502589

A survey of human brain transcriptome diversity at the single cell level

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5502589

Human genomics. The Genotype-Tissue Expression (GTEx) pilot analysis: multitissue gene regulation in humans

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5502589

Developmental regulation of human cortex transcription and its clinical relevance at single base resolution

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5502589

A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium

5 July 2018

1 reference

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Detecting and correcting systematic variation in large-scale RNA sequencing data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5502589

Normalization of RNA-seq data using factor analysis of control genes or samples

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5502589

Multi-platform assessment of transcriptome profiling using RNA-seq in the ABRF next-generation sequencing study.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5502589

RNA-seq: impact of RNA degradation on transcript quantification

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5502589

Accounting for cellular heterogeneity is critical in epigenome-wide association studies

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5502589

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5502589

Reproducibility of high-throughput mRNA and small RNA sequencing across laboratories

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5502589

Comparative analysis of RNA sequencing methods for degraded or low-input samples

5 July 2018

1 reference

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Integrated systems approach identifies genetic nodes and networks in late-onset Alzheimer's disease

5 July 2018

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TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

5 July 2018

1 reference

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clusterProfiler: an R package for comparing biological themes among gene clusters.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5502589

The sva package for removing batch effects and other unwanted variation in high-throughput experiments

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5502589

Transcriptomic analysis of autistic brain reveals convergent molecular pathology

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5502589

Tackling the widespread and critical impact of batch effects in high-throughput data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5502589

Capturing heterogeneity in gene expression studies by surrogate variable analysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5502589

The RIN: an RNA integrity number for assigning integrity values to RNA measurements

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5502589

Exploration, normalization, and summaries of high density oligonucleotide array probe level data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5502589

5 July 2018

Identifiers

DOI

10.1073/PNAS.1617384114

1 reference

release_fvh5xzyxvrf6xlg3kux3ojte2a

29 July 2017

0 references

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/fvh5xzyxvrf6xlg3kux3ojte2a

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMC publication ID

5502589

1 reference

29 July 2017

1 reference