Analog regulation of metabolic demand (Q33846592)

29 July 2017

title

Analog regulation of metabolic demand (English)

1 reference

29 July 2017

4

Marc-Thorsten Hütt

1 reference

29 July 2017

Nikolaus Sonnenschein

1

object named as

Nikolaus Sonnenschein

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC:MED AND EXT_ID:21406074

27 November 2024

author name string

Marcel Geertz

2

1 reference

29 July 2017

Georgi Muskhelishvili

3

1 reference

29 July 2017

language of work or name

English

1 reference

National Center for Biotechnology Information

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=21406074

27 November 2024

publication date

15 March 2011

1 reference

full work available at URL

29 July 2017

https://bmcsystbiol.biomedcentral.com/counter/pdf/10.1186/1752-0509-5-40

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC:MED AND EXT_ID:21406074

http://www.biomedcentral.com/1752-0509/5/40

27 November 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC:MED AND EXT_ID:21406074

http://www.biomedcentral.com/1752-0509/5/40/abstract

27 November 2024

online access status

open access

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC:MED AND EXT_ID:21406074

http://www.biomedcentral.com/content/pdf/1752-0509-5-40.pdf

27 November 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC:MED AND EXT_ID:21406074

https://europepmc.org/articles/PMC3068955

27 November 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC:MED AND EXT_ID:21406074

https://europepmc.org/articles/PMC3068955?pdf=render

27 November 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC:MED AND EXT_ID:21406074

http://link.springer.com/content/pdf/10.1186/1752-0509-5-40.pdf

27 November 2024

1 reference

https://api.crossref.org/works/10.1186/1752-0509-5-40

http://link.springer.com/article/10.1186/1752-0509-5-40/fulltext.html

27 November 2024

1 reference

https://api.crossref.org/works/10.1186/1752-0509-5-40

27 November 2024

1 reference

29 July 2017

volume

5

1 reference

29 July 2017

page(s)

40

1 reference

Creative Commons Attribution 2.0 Generic

29 July 2017

copyright license

start time

15 March 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

cites work

BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3068955

General organisational principles of the transcriptional regulation system: a tree or a circle?

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3068955

Interplay between Topology and Dynamics in Excitation Patterns on Hierarchical Graphs

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3068955

Context-specific metabolic networks are consistent with experiments

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3068955

Dissecting the logical types of network control in gene expression profiles

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3068955

Co-regulation of metabolic genes is better explained by flux coupling than by network distance

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3068955

RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3068955

KEGG for linking genomes to life and the environment

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3068955

Multidimensional annotation of the Escherichia coli K-12 genome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3068955

The fluxes through glycolytic enzymes in Saccharomyces cerevisiae are predominantly regulated at posttranscriptional levels

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3068955

A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3068955

Homeostatic regulation of supercoiling sensitivity coordinates transcription of the bacterial genome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3068955

Expression dynamics of a cellular metabolic network

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3068955

A genetic selection for supercoiling mutants of Escherichia coli reveals proteins implicated in chromosome structure

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3068955

Functional cartography of complex metabolic networks

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3068955

DNA supercoiling - a global transcriptional regulator for enterobacterial growth?

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3068955

Genomic transcriptional response to loss of chromosomal supercoiling in Escherichia coli

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3068955

Spatial patterns of transcriptional activity in the chromosome of Escherichia coli

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3068955

Genome-scale models of microbial cells: evaluating the consequences of constraints

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3068955

Why is transcription coupled to translation in bacteria?

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3068955

Genomic analysis of regulatory network dynamics reveals large topological changes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3068955

Activation of transcription initiation from a stable RNA promoter by a Fis protein-mediated DNA structural transmission mechanism

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3068955

Just-in-time transcription program in metabolic pathways

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3068955

Advances in flux balance analysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3068955

An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3068955

TM4: a free, open-source system for microarray data management and analysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3068955

The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3068955

A microarray-based antibiotic screen identifies a regulatory role for supercoiling in the osmotic stress response of Escherichia coli

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3068955

Reconstruction of metabolic networks from genome data and analysis of their global structure for various organisms

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3068955

DNA topology-mediated control of global gene expression in Escherichia coli

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3068955

A comparative review of statistical methods for discovering differentially expressed genes in replicated microarray experiments

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3068955

Promoter protection by a transcription factor acting as a local topological homeostat

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3068955

Topoisomerase IV, not gyrase, decatenates products of site-specific recombination in Escherichia coli

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3068955

Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild-type Escherichia coli W3110.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3068955

Changes in the linking number of supercoiled DNA accompany growth transitions in Escherichia coli

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3068955

DNA microloops and microdomains: a general mechanism for transcription activation by torsional transmission

5 July 2018

1 reference

https://api.crossref.org/works/10.1186/1752-0509-5-40

Mechanism of transcriptional activation by FIS: role of core promoter structure and DNA topology.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186/1752-0509-5-40

Chromatin places metabolism center stage.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186/1752-0509-5-40

DNA supercoiling in Escherichia coli is under tight and subtle homeostatic control, involving gene-expression and metabolic regulation of both topoisomerase I and DNA gyrase.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186/1752-0509-5-40

DNA supercoiling depends on the phosphorylation potential in Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186/1752-0509-5-40

A systematic in vitro study of nucleoprotein complexes formed by bacterial nucleoid-associated proteins revealing novel types of DNA organization

21 January 2018

1 reference

https://api.crossref.org/works/10.1186/1752-0509-5-40

The expression of the Escherichia coli fis gene is strongly dependent on the superhelical density of DNA

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21406074

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Locally Weighted Regression: An Approach to Regression Analysis by Local Fitting

43

1 reference

DOI

https://api.crossref.org/works/10.1186/1752-0509-5-40

27 November 2024

Identifiers

DOI

1 reference

journals/bmcsb/SonnenscheinGMH11

29 July 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

29 July 2017

1 reference