Genome-wide and phase-specific DNA-binding rhythms of BMAL1 control circadian output functions in mouse liver (Q33834076)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21364973 AND SRC:MED&resulttype=core&format=json

24 January 2020

title

Genome-wide and phase-specific DNA-binding rhythms of BMAL1 control circadian output functions in mouse liver (English)

1 reference

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24 January 2020

0 references

1

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24 January 2020

Jacques Rougemont

3

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24 January 2020

6

Felix Naef

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24 January 2020

author name string

François Cesbron

2

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24 January 2020

Hans Reinke

4

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24 January 2020

Michael Brunner

5

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24 January 2020

language of work or name

English

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publication date

22 February 2011

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24 January 2020

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24 January 2020

volume

9

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24 January 2020

issue

2

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24 January 2020

page(s)

e1000595

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Creative Commons Attribution 4.0 International

24 January 2020

copyright license

start time

22 February 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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Circadian clock gene Bmal1 is not essential; functional replacement with its paralog, Bmal2.

4 July 2018

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4 July 2018

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4 July 2018

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4 July 2018

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Conserved principles of mammalian transcriptional regulation revealed by RNA half-life

4 July 2018

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Roles of CLOCK phosphorylation in suppression of E-box-dependent transcription

4 July 2018

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The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.

4 July 2018

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4 July 2018

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Circadian clock feedback cycle through NAMPT-mediated NAD biosynthesis

4 July 2018

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4 July 2018

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Circadian control of the NAD salvage pathway by CLOCK-SIRT1

4 July 2018

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4 July 2018

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4 July 2018

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4 July 2018

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4 July 2018

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4 July 2018

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4 July 2018

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4 July 2018

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4 July 2018

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4 July 2018

The meter of metabolism

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4 July 2018

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Redundant function of REV-ERBalpha and beta and non-essential role for Bmal1 cycling in transcriptional regulation of intracellular circadian rhythms

4 July 2018

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DEC1 modulates the circadian phase of clock gene expression

4 July 2018

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Modeling an evolutionary conserved circadian cis-element

4 July 2018

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Differential display of DNA-binding proteins reveals heat-shock factor 1 as a circadian transcription factor

4 July 2018

1 reference

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A direct repeat of E-box-like elements is required for cell-autonomous circadian rhythm of clock genes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3043000

The circadian clock component BMAL1 is a critical regulator of p21WAF1/CIP1 expression and hepatocyte proliferation

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3043000

Circadian and CLOCK-controlled regulation of the mouse transcriptome and cell proliferation

4 July 2018

1 reference

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System-driven and oscillator-dependent circadian transcription in mice with a conditionally active liver clock

4 July 2018

1 reference

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Circadian rhythms: mechanisms and therapeutic implications

4 July 2018

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Molecular components of the mammalian circadian clock

4 July 2018

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Nuclear receptor expression links the circadian clock to metabolism

4 July 2018

1 reference

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Statistical mechanical modeling of genome-wide transcription factor occupancy data by MatrixREDUCE.

4 July 2018

1 reference

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4 July 2018

1 reference

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The circadian PAR-domain basic leucine zipper transcription factors DBP, TEF, and HLF modulate basal and inducible xenobiotic detoxification

4 July 2018

1 reference

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A clock shock: mouse CLOCK is not required for circadian oscillator function

4 July 2018

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Rhythmic CLOCK-BMAL1 binding to multiple E-box motifs drives circadian Dbp transcription and chromatin transitions

4 July 2018

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4 July 2018

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Circadian clocks: neural and peripheral pacemakers that impact upon the cell division cycle

4 July 2018

1 reference

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Obesity and metabolic syndrome in circadian Clock mutant mice

4 July 2018

1 reference

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Cellular oscillators: rhythmic gene expression and metabolism

4 July 2018

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4 July 2018

1 reference

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BMAL1 and CLOCK, two essential components of the circadian clock, are involved in glucose homeostasis

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3043000

CLOCK is involved in the circadian transactivation of peroxisome-proliferator-activated receptor alpha (PPARalpha) in mice.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3043000

Structure and function of the feed-forward loop network motif

4 July 2018

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4 July 2018

1 reference

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Dec1 and Dec2 are regulators of the mammalian molecular clock

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3043000

Coordination of circadian timing in mammals

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3043000

The orphan nuclear receptor REV-ERBalpha controls circadian transcription within the positive limb of the mammalian circadian oscillator

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3043000

Coordinated transcription of key pathways in the mouse by the circadian clock

4 July 2018

1 reference

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Extensive and divergent circadian gene expression in liver and heart

4 July 2018

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Circadian programs of transcriptional activation, signaling, and protein turnover revealed by microarray analysis of mammalian cells

4 July 2018

1 reference

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Posttranslational mechanisms regulate the mammalian circadian clock

4 July 2018

1 reference

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NPAS2: an analog of clock operative in the mammalian forebrain

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3043000

Mop3 is an essential component of the master circadian pacemaker in mammals

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3043000

The basic helix-loop-helix-PAS protein MOP9 is a brain-specific heterodimeric partner of circadian and hypoxia factors

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3043000

Interacting molecular loops in the mammalian circadian clock

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3043000

CLOCK, an essential pacemaker component, controls expression of the circadian transcription factor DBP.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3043000

Light-independent role of CRY1 and CRY2 in the mammalian circadian clock.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3043000

mCRY1 and mCRY2 are essential components of the negative limb of the circadian clock feedback loop

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3043000

Role of the CLOCK protein in the mammalian circadian mechanism

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3043000

The basic-helix-loop-helix-PAS orphan MOP3 forms transcriptionally active complexes with circadian and hypoxia factors

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3043000

Cell size regulation, a mechanism that controls cellular RNA accumulation: consequences on regulation of the ubiquitous transcription factors Oct1 and NF-Y and the liver-enriched transcription factor DBP.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3043000

In vivo demonstration of the circadian thythm of cholesterol biosynthesis in the liver and intestine of the rat.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3043000

Weight matrix descriptions of four eukaryotic RNA polymerase II promoter elements derived from 502 unrelated promoter sequences

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3043000

Reciprocal regulation of brain and muscle Arnt-like protein 1 and peroxisome proliferator-activated receptor alpha defines a novel positive feedback loop in the rodent liver circadian clock.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3043000

Dual role of the CLOCK/BMAL1 circadian complex in transcriptional regulation.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3043000

Molecular and statistical tools for circadian transcript profiling.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3043000

Control mechanism of the circadian clock for timing of cell division in vivo

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3043000

Cross-talk between hypoxic and circadian pathways: cooperative roles for hypoxia-inducible factor 1alpha and CLOCK in transcriptional activation of the vasopressin gene.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3043000

A daily rhythm in glucose tolerance: a role for the suprachiasmatic nucleus

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3043000

Rhythmic histone acetylation underlies transcription in the mammalian circadian clock

29 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21364973

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Expression of the Peroxisome Proliferator-activated Receptor Gene Is Stimulated by Stress and Follows a Diurnal Rhythm

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21364973

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PBIO.1000595

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21364973 AND SRC:MED&resulttype=core&format=json

24 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21364973 AND SRC:MED&resulttype=core&format=json

24 January 2020

PubMed publication ID

21364973

1 reference