An iterative workflow for mining the human intestinal metaproteome (Q33786240)

29 July 2017

title

An iterative workflow for mining the human intestinal metaproteome (English)

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29 July 2017

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4

Joël Doré

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29 July 2017

Peter J Schaap

10

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Pilar Galan

7

object named as

Pilar Galan

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29 July 2017

9

Willem M de Vos

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29 July 2017

Koos Rooijers

1

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29 July 2017

Carolin Kolmeder

2

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29 July 2017

Catherine Juste

3

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29 July 2017

Mark de Been

5

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29 July 2017

Sjef Boeren

6

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29 July 2017

Christian Beauvallet

8

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29 July 2017

language of work or name

English

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publication date

5 January 2011

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29 July 2017

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29 July 2017

volume

12

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29 July 2017

page(s)

6

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Analysis of biostimulated microbial communities from two field experiments reveals temporal and spatial differences in proteome profiles

29 July 2017

cites work

1 reference

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A catalog of reference genomes from the human microbiome

4 July 2018

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Metagenomic sequencing of an in vitro-simulated microbial community

4 July 2018

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A human gut microbial gene catalogue established by metagenomic sequencing

4 July 2018

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The effect of sequencing errors on metagenomic gene prediction

4 July 2018

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Proteogenomic monitoring of Geobacter physiology during stimulated uranium bioremediation

4 July 2018

1 reference

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Development and application of the human intestinal tract chip, a phylogenetic microarray: analysis of universally conserved phylotypes in the abundant microbiota of young and elderly adults

4 July 2018

1 reference

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Environmental proteomics: applications of proteome profiling in environmental microbiology and biotechnology.

4 July 2018

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Systems biology: Functional analysis of natural microbial consortia using community proteomics

4 July 2018

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High-throughput diversity and functionality analysis of the gastrointestinal tract microbiota.

4 July 2018

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Proteogenomics: needs and roles to be filled by proteomics in genome annotation

4 July 2018

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The Mucin degrader Akkermansia muciniphila is an abundant resident of the human intestinal tract

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023752

How do shotgun proteomics algorithms identify proteins?

4 July 2018

1 reference

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Use of simulated data sets to evaluate the fidelity of metagenomic processing methods

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023752

Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry

4 July 2018

1 reference

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The gut flora as a forgotten organ

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023752

A dynamic partnership: Celebrating our gut flora

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023752

Who controls the crowd? New findings and old questions about the intestinal microflora

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023752

The SU.VI.MAX Study: a randomized, placebo-controlled trial of the health effects of antioxidant vitamins and minerals

4 July 2018

1 reference

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Open mass spectrometry search algorithm

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023752

The power and the limitations of cross-species protein identification by mass spectrometry-driven sequence similarity searches

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023752

Mastering seeds for genomic size nucleotide BLAST searches

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023752

Mass spectrometry-based proteomics

4 July 2018

1 reference

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Gut flora in health and disease

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023752

The host-microbe interface within the gut

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023752

PatternHunter: faster and more sensitive homology search

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023752

Commensal host-bacterial relationships in the gut

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023752

The COG database: new developments in phylogenetic classification of proteins from complete genomes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023752

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3023752

One-step subcellular fractionation of rat liver tissue using a Nycodenz density gradient prepared by freezing-thawing and two-dimensional sodium dodecyl sulfate electrophoresis profiles of the main fraction of organelles

4 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186/1471-2164-12-6

Shotgun metaproteomics of the human distal gut microbiota

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186/1471-2164-12-6

21 January 2018

Identifiers

DOI

10.1186/1471-2164-12-6

1 reference

Dimensions Publication ID

29 July 2017

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-12-6

9 September 2019

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29 July 2017

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