Automation in single-particle electron microscopy connecting the pieces. (Q33708402)

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14 February 2020

title

Automation in single-particle electron microscopy connecting the pieces (English)

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14 February 2020

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12

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14 February 2020

Arne Möller

2

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14 February 2020

Bridget Carragher

14

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14 February 2020

author name string

Dmitry Lyumkis

1

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14 February 2020

Anchi Cheng

3

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14 February 2020

Amber Herold

4

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14 February 2020

Eric Hou

5

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14 February 2020

Christopher Irving

6

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14 February 2020

Erica L Jacovetty

7

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14 February 2020

Pick-Wei Lau

8

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14 February 2020

Anke M Mulder

9

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14 February 2020

James Pulokas

10

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14 February 2020

Joel D Quispe

11

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14 February 2020

Clinton S Potter

13

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14 February 2020

language of work or name

English

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publication date

1 January 2010

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14 February 2020

published in

Methods in Enzymology

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14 February 2020

volume

483

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14 February 2020

page(s)

291-338

1 reference

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Determining the architectures of macromolecular assemblies

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A new 3-D reconstruction scheme applied to the 50S ribosomal subunit of E. coli

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Fast, robust, and accurate determination of transmission electron microscopy contrast transfer function

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Marker-free image registration of electron tomography tilt-series

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Error analysis in the determination of the electron microscopical contrast transfer function parameters from experimental power Spectra

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Automatic particle selection from electron micrographs using machine learning techniques

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7 January 2021

Ab initio resolution measurement for single particle structures

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7 January 2021

Automated cryoEM data acquisition and analysis of 284742 particles of GroEL.

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7 January 2021

Noise bias in the refinement of structures derived from single particles

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Automated molecular microscopy: the new Leginon system

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Fully automated, sequential tilt-series acquisition with Leginon

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7 January 2021

EMAN2: an extensible image processing suite for electron microscopy

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7 January 2021

Electron microscopy of frozen hydrated biological specimens

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7 January 2021

A binary segmentation approach for boxing ribosome particles in cryo EM micrographs

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7 January 2021

A new resolution criterion based on spectral signal-to-noise ratios

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7 January 2021

The spectral signal-to-noise ratio resolution criterion: computational efficiency and statistical precision.

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https://api.crossref.org/works/10.1016/S0076-6879(10)83015-0

7 January 2021

Multivariate statistical classification of noisy images (randomly oriented biological macromolecules).

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(10)83015-0

7 January 2021

Angular reconstitution: a posteriori assignment of projection directions for 3D reconstruction.

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(10)83015-0

7 January 2021

A new generation of the IMAGIC image processing system

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(10)83015-0

7 January 2021

Single-particle electron cryo-microscopy: towards atomic resolution.

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(10)83015-0

7 January 2021

A method for estimating the CTF in electron microscopy based on ARMA models and parameter adjustment

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(10)83015-0

7 January 2021

A high-throughput strategy to screen 2D crystallization trials of membrane proteins

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(10)83015-0

7 January 2021

An approach to automated particle picking from electron micrographs based on reduced representation templates

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(10)83015-0

7 January 2021

DoG Picker and TiltPicker: software tools to facilitate particle selection in single particle electron microscopy

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(10)83015-0

7 January 2021

A toolbox for ab initio 3-D reconstructions in single-particle electron microscopy.

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(10)83015-0

7 January 2021

Observation of transient disorder during myosin subfragment-1 binding to actin by stopped-flow fluorescence and millisecond time resolution electron cryomicroscopy: evidence that the start of the crossbridge power stroke in muscle has variable geome

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(10)83015-0

7 January 2021

The use of fast Fourier transform for the estimation of power spectra: A method based on time averaging over short, modified periodograms

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(10)83015-0

7 January 2021

A computer-controlled spraying-freezing apparatus for millisecond time-resolution electron cryomicroscopy

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(10)83015-0

7 January 2021

A second generation apparatus for time-resolved electron cryo-microscopy using stepper motors and electrospray.

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(10)83015-0

7 January 2021

Accurate marker-free alignment with simultaneous geometry determination and reconstruction of tilt series in electron tomography

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(10)83015-0

7 January 2021

Tomographic subvolume alignment and subvolume classification applied to myosin V and SIV envelope spikes

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(10)83015-0

7 January 2021

Model-based particle picking for cryo-electron microscopy

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(10)83015-0

7 January 2021

Ab initio random model method facilitates 3D reconstruction of icosahedral particles

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(10)83015-0

7 January 2021

Automation of random conical tilt and orthogonal tilt data collection using feature-based correlation

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(10)83015-0

7 January 2021

Cryomesh: a new substrate for cryo-electron microscopy

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(10)83015-0

7 January 2021

3.88 Å structure of cytoplasmic polyhedrosis virus by cryo-electron microscopy

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(10)83015-0

7 January 2021

Coma-free alignment of high resolution electron microscopes with the aid of optical diffractograms

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(10)83015-0

7 January 2021

Automated data collection with a Tecnai 12 electron microscope: applications for molecular imaging by cryomicroscopy.

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(10)83015-0

7 January 2021

Automated image acquisition and processing using a new generation of 4K x 4K CCD cameras for cryo electron microscopic studies of macromolecular assemblies.

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(10)83015-0

7 January 2021

Near-atomic resolution using electron cryomicroscopy and single-particle reconstruction

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(10)83015-0

7 January 2021

JADAS: a customizable automated data acquisition system and its application to ice-embedded single particles

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(10)83015-0

7 January 2021

UCSF tomography: an integrated software suite for real-time electron microscopic tomographic data collection, alignment, and reconstruction

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(10)83015-0

7 January 2021

Automated acquisition of electron microscopic random conical tilt sets

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(10)83015-0

7 January 2021

Dual-axis target mapping and automated sequential acquisition of dual-axis EM tomographic data

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(10)83015-0

7 January 2021

CTF determination of images of ice-embedded single particles using a graphics interface

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(10)83015-0

7 January 2021

Automatic particle detection through efficient Hough transforms

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(10)83015-0

7 January 2021

Automatic particle selection: results of a comparative study

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(10)83015-0

7 January 2021

Classification of images of biomolecular assemblies: a study of ribosomes and ribosomal subunits of Escherichia coli

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(10)83015-0

7 January 2021

Motif detection in quantum noise-limited electron micrographs by cross-correlation

1 reference

https://api.crossref.org/works/10.1016/S0076-6879(10)83015-0

7 January 2021