Hydroxymethylation as a Novel Environmental Biosensor (Q33644685)

28 July 2017

title

Hydroxymethylation as a Novel Environmental Biosensor (English)

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28 July 2017

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T Dao

1

1 reference

28 July 2017

R Y S Cheng

2

1 reference

28 July 2017

M P Revelo

3

1 reference

28 July 2017

W Mitzner

4

1 reference

28 July 2017

Wy Tang

5

1 reference

28 July 2017

publication date

1 March 2014

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Current Environmental Health Reports

28 July 2017

published in

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28 July 2017

volume

1

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28 July 2017

issue

1

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28 July 2017

page(s)

1-10

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Persistently altered epigenetic marks in the mouse uterus after neonatal estrogen exposure.

28 July 2017

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14 July 2018

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Hydroquinone increases 5-hydroxymethylcytosine formation through ten eleven translocation 1 (TET1) 5-methylcytosine dioxygenase

14 July 2018

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14 July 2018

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Genome-wide hydroxymethylation tested using the HELP-GT assay shows redistribution in cancer.

14 July 2018

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TET1 plays an essential oncogenic role in MLL-rearranged leukemia

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4029614

Vitamin C induces Tet-dependent DNA demethylation and a blastocyst-like state in ES cells

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4029614

Potential risk of asthma associated with in utero exposure to xenobiotics

14 July 2018

1 reference

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Tet family of 5-methylcytosine dioxygenases in mammalian development

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4029614

Decrease of 5-hydroxymethylcytosine is associated with progression of hepatocellular carcinoma through downregulation of TET1.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4029614

Genome-wide loss of 5-hmC is a novel epigenetic feature of Huntington's disease

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4029614

5-hydroxymethylcytosine and its potential roles in development and cancer.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4029614

TET proteins: on the frenetic hunt for new cytosine modifications.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4029614

Dynamic changes in 5-hydroxymethylation signatures underpin early and late events in drug exposed liver.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4029614

Ascorbate induces ten-eleven translocation (Tet) methylcytosine dioxygenase-mediated generation of 5-hydroxymethylcytosine

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4029614

Epigenetic alterations by DNA methylation in house dust mite-induced airway hyperresponsiveness

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4029614

Loss of 5-hydroxymethylcytosine and ten-eleven translocation 2 protein expression in malignant melanoma

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4029614

Genome-wide comparison of DNA hydroxymethylation in mouse embryonic stem cells and neural progenitor cells by a new comparative hMeDIP-seq method

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4029614

Strategies for discovery and validation of methylated and hydroxymethylated DNA biomarkers

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4029614

MeCP2 binds to 5hmC enriched within active genes and accessible chromatin in the nervous system.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4029614

Tet-assisted bisulfite sequencing of 5-hydroxymethylcytosine.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4029614

Non-genotoxic carcinogen exposure induces defined changes in the 5-hydroxymethylome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4029614

Loss of 5-hydroxymethylcytosine is an epigenetic hallmark of melanoma

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4029614

The dynamics of DNA methylation in schizophrenia and related psychiatric disorders.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4029614

Upregulation of TET1 and downregulation of APOBEC3A and APOBEC3C in the parietal cortex of psychotic patients

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4029614

Decreased 5-hydroxymethylcytosine is associated with neural progenitor phenotype in normal brain and shorter survival in malignant glioma

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4029614

Base-resolution analysis of 5-hydroxymethylcytosine in the mammalian genome.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4029614

Tet family proteins and 5-hydroxymethylcytosine in development and disease

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4029614

Mbd3/NURD complex regulates expression of 5-hydroxymethylcytosine marked genes in embryonic stem cells

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4029614

DNA methylation: TET proteins-guardians of CpG islands?

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4029614

Mechanisms and functions of Tet protein-mediated 5-methylcytosine oxidation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4029614

Tissue type is a major modifier of the 5-hydroxymethylcytosine content of human genes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4029614

Uncovering the role of 5-hydroxymethylcytosine in the epigenome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4029614

5-Hydroxymethylcytosine is strongly depleted in human cancers but its levels do not correlate with IDH1 mutations

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4029614

Tet1 and 5-hydroxymethylation: a genome-wide view in mouse embryonic stem cells.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4029614

Hypothesis: Environmental regulation of 5-hydroxymethylcytosine by oxidative stress

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4029614

Oncometabolite 2-hydroxyglutarate is a competitive inhibitor of α-ketoglutarate-dependent dioxygenases

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4029614

Discrimination of Methylcytosine from Hydroxymethylcytosine in DNA Molecules

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4029614

Selective chemical labeling reveals the genome-wide distribution of 5-hydroxymethylcytosine

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4029614

Impaired hydroxylation of 5-methylcytosine in myeloid cancers with mutant TET2

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4029614

Sensitive enzymatic quantification of 5-hydroxymethylcytosine in genomic DNA

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4029614

Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4029614

Oxidative damage to methyl-CpG sequences inhibits the binding of the methyl-CpG binding domain (MBD) of methyl-CpG binding protein 2 (MeCP2).

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4029614

Epigenetics in human disease and prospects for epigenetic therapy

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4029614

Epigenetic regulation of gene expression: how the genome integrates intrinsic and environmental signals

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4029614

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4029614

T4 phage beta-glucosyltransferase: substrate binding and proposed catalytic mechanism

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4029614

A convenient method for selective detection of 5-hydroxymethylcytosine and 5-formylcytosine sites in DNA sequences

14 July 2018

1 reference

https://api.crossref.org/works/10.1007/S40572-013-0005-5

Ascorbic acid enhances Tet-mediated 5-methylcytosine oxidation and promotes DNA demethylation in mammals

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S40572-013-0005-5

Decreased 5-hydroxymethylcytosine levels are associated with TET2 mutation and unfavorable overall survival in myelodysplastic syndromes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S40572-013-0005-5

Behavioral and neurobiological effects of prenatal stress exposure in male and female APPswe/PS1dE9 mice.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S40572-013-0005-5

The 2008 World Health Organization classification system for myeloproliferative neoplasms: order out of chaos

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S40572-013-0005-5

4th Aegean Conference on the Crossroads between Innate and Adaptive Immunity

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S40572-013-0005-5

Mass spectrometric characterization of urinary toremifene metabolites for doping control analyses

21 January 2018

1 reference

https://api.crossref.org/works/10.1007/S40572-013-0005-5

Simultaneous determination of global DNA methylation and hydroxymethylation levels by hydrophilic interaction liquid chromatography-tandem mass spectrometry

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24860723

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

[Analysis of global deoxyribonucleic acid 5-hydroxymethylcytosine in tissue by liquid chromatography-tandem mass spectrometry]

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24860723

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1007/S40572-013-0005-5

1 reference

Dimensions Publication ID

28 July 2017

1022166888

0 references

Fatcat ID

release_y75aera2njgcpe64uhqfp5hphu

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/y75aera2njgcpe64uhqfp5hphu

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMC publication ID

4029614

1 reference

28 July 2017

1 reference