Network modeling reveals prevalent negative regulatory relationships between signaling sectors in Arabidopsis immune signaling (Q33641416)

28 July 2017

title

Network modeling reveals prevalent negative regulatory relationships between signaling sectors in Arabidopsis immune signaling (English)

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28 July 2017

6

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28 July 2017

2

Kenichi Tsuda

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28 July 2017

Yuichiro Watanabe

5

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Fumiaki Katagiri

object named as

Fumiaki Katagiri

7

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author name string

Masanao Sato

1

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28 July 2017

Lin Wang

3

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28 July 2017

John Coller

4

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28 July 2017

publication date

22 July 2010

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28 July 2017

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28 July 2017

volume

6

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28 July 2017

issue

7

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28 July 2017

page(s)

e1001011

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Creative Commons Attribution 4.0 International

28 July 2017

copyright license

start time

22 July 2010

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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Enhanced abscisic acid-mediated responses in nia1nia2noa1-2 triple mutant impaired in NIA/NR- and AtNOA1-dependent nitric oxide biosynthesis in Arabidopsis

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21 June 2018

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Arabidopsis CaM binding protein CBP60g contributes to MAMP-induced SA accumulation and is involved in disease resistance against Pseudomonas syringae

21 June 2018

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Glucosinolate metabolites required for an Arabidopsis innate immune response

21 June 2018

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Phytopathogen type III effector weaponry and their plant targets

21 June 2018

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Dual control of nuclear EIN3 by bifurcate MAPK cascades in C2H4 signalling

21 June 2018

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A Pseudomonas syringae effector inactivates MAPKs to suppress PAMP-induced immunity in plants

21 June 2018

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Salicylic acid in plant defence--the players and protagonists.

21 June 2018

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Pathological hormone imbalances

21 June 2018

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The JAZ family of repressors is the missing link in jasmonate signalling.

21 June 2018

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Salicylic acid activates nitric oxide synthesis in Arabidopsis

21 June 2018

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RAR1, a central player in plant immunity, is targeted by Pseudomonas syringae effector AvrB.

21 June 2018

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21 June 2018

The plant immune system

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The Connectivity Map: using gene-expression signatures to connect small molecules, genes, and disease

21 June 2018

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Ethylene as a modulator of disease resistance in plants

21 June 2018

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Pre- and postinvasion defenses both contribute to nonhost resistance in Arabidopsis.

21 June 2018

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Contrasting mechanisms of defense against biotrophic and necrotrophic pathogens

21 June 2018

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Arabidopsis SENESCENCE-ASSOCIATED GENE101 stabilizes and signals within an ENHANCED DISEASE SUSCEPTIBILITY1 complex in plant innate immunity

21 June 2018

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Innate immunity in Arabidopsis thaliana: lipopolysaccharides activate nitric oxide synthase (NOS) and induce defense genes.

21 June 2018

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NPR1, all things considered

21 June 2018

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The transcriptional innate immune response to flg22. Interplay and overlap with Avr gene-dependent defense responses and bacterial pathogenesis

21 June 2018

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Bacterial disease resistance in Arabidopsis through flagellin perception

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908620

Local Context Finder (LCF) reveals multidimensional relationships among mRNA expression profiles of Arabidopsis responding to pathogen infection

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908620

The salicylic acid loop in plant defense

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908620

Fitness costs of R-gene-mediated resistance in Arabidopsis thaliana.

21 June 2018

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Interplay of the Arabidopsis nonhost resistance gene NHO1 with bacterial virulence

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908620

Initiation of RPS2-specified disease resistance in Arabidopsis is coupled to the AvrRpt2-directed elimination of RIN4.

21 June 2018

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Characterization of an Arabidopsis Mutant That Is Nonresponsive to Inducers of Systemic Acquired Resistance

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908620

A knock-out mutation in allene oxide synthase results in male sterility and defective wound signal transduction in Arabidopsis due to a block in jasmonic acid biosynthesis

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908620

Systems biology: a brief overview

21 June 2018

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Inference of a genetic network by a combined approach of cluster analysis and graphical Gaussian modeling.

21 June 2018

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Arabidopsis gp91phox homologues AtrbohD and AtrbohF are required for accumulation of reactive oxygen intermediates in the plant defense response

21 June 2018

1 reference

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Isochorismate synthase is required to synthesize salicylic acid for plant defence

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908620

Plant pathogens and integrated defence responses to infection

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908620

Nonlinear dimensionality reduction by locally linear embedding

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908620

Functional discovery via a compendium of expression profiles

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908620

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908620

Arabidopsis thaliana PAD4 encodes a lipase-like gene that is important for salicylic acid signaling

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908620

A single locus determines sensitivity to bacterial flagellin in Arabidopsis thaliana

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908620

Identification of three putative signal transduction genes involved in R gene-specified disease resistance in Arabidopsis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908620

EDS1, an essential component of R gene-mediated disease resistance in Arabidopsis has homology to eukaryotic lipases

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908620

Nitric oxide functions as a signal in plant disease resistance

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908620

Six Arabidopsis thaliana homologues of the human respiratory burst oxidase (gp91phox).

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908620

COI1: an Arabidopsis gene required for jasmonate-regulated defense and fertility

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908620

Uncoupling PR gene expression from NPR1 and bacterial resistance: characterization of the dominant Arabidopsis cpr6-1 mutant.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908620

NDR1 , a Pathogen-Induced Component Required for Arabidopsis Disease Resistance

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908620

Activation of the ethylene gas response pathway in Arabidopsis by the nuclear protein ETHYLENE-INSENSITIVE3 and related proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908620

The Arabidopsis NPR1 gene that controls systemic acquired resistance encodes a novel protein containing ankyrin repeats

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908620

Genetic analysis of ethylene signal transduction in Arabidopsis thaliana: five novel mutant loci integrated into a stress response pathway

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908620

Identification of the Arabidopsis CHL3 gene as the nitrate reductase structural gene NIA2.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908620

Identification of Pseudomonas syringae pathogens of Arabidopsis and a bacterial locus determining avirulence on both Arabidopsis and soybean

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908620

Arabidopsis RIN4 is a target of the type III virulence effector AvrRpt2 and modulates RPS2-mediated resistance.

21 June 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PPAT.1001011

The Pseudomonas syringae type III effector tyrosine phosphatase HopAO1 suppresses innate immunity in Arabidopsis thaliana.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PPAT.1001011

Genetic elucidation of nitric oxide signaling in incompatible plant-pathogen interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PPAT.1001011

EDS5, an essential component of salicylic acid-dependent signaling for disease resistance in Arabidopsis, is a member of the MATE transporter family

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PPAT.1001011

Topology of the network integrating salicylate and jasmonate signal transduction derived from global expression phenotyping

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PPAT.1001011

Jasmonate response locus JAR1 and several related Arabidopsis genes encode enzymes of the firefly luciferase superfamily that show activity on jasmonic, salicylic, and indole-3-acetic acids in an assay for adenylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PPAT.1001011

JASMONATE-INSENSITIVE1 encodes a MYC transcription factor essential to discriminate between different jasmonate-regulated defense responses in Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PPAT.1001011

EIN2, a bifunctional transducer of ethylene and stress responses in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PPAT.1001011

Interplay between MAMP-triggered and SA-mediated defense responses

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PPAT.1001011

Natural variation among Arabidopsis thaliana accessions for transcriptome response to exogenous salicylic acid

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PPAT.1001011

Natural variation in RPS2-mediated resistance among Arabidopsis accessions: correlation between gene expression profiles and phenotypic responses.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PPAT.1001011

A high-performance, small-scale microarray for expression profiling of many samples in Arabidopsis-pathogen studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PPAT.1001011

Activation of a COI1-dependent pathway in Arabidopsis by Pseudomonas syringae type III effectors and coronatine

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PPAT.1001011

MAP kinase signalling cascade in Arabidopsis innate immunity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PPAT.1001011

Sensitivity of different ecotypes and mutants of Arabidopsis thaliana toward the bacterial elicitor flagellin correlates with the presence of receptor-binding sites.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PPAT.1001011

Quantitative nature of Arabidopsis responses during compatible and incompatible interactions with the bacterial pathogen Pseudomonas syringae

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PPAT.1001011

The mitogen-activated protein kinase cascade MKK3-MPK6 is an important part of the jasmonate signal transduction pathway in Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PPAT.1001011

ETHYLENE INSENSITIVE3 and ETHYLENE INSENSITIVE3-LIKE1 repress SALICYLIC ACID INDUCTION DEFICIENT2 expression to negatively regulate plant innate immunity in Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PPAT.1001011

Loss of a callose synthase results in salicylic acid-dependent disease resistance

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PPAT.1001011

Layered basal defenses underlie non-host resistance of Arabidopsis to Pseudomonas syringae pv. phaseolicola.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PPAT.1001011

An Arabidopsis Callose Synthase, GSL5, Is Required for Wound and Papillary Callose Formation

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PPAT.1001011

NPR1 modulates cross-talk between salicylate- and jasmonate-dependent defense pathways through a novel function in the cytosol

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PPAT.1001011

Negative regulation of PAMP-triggered immunity by an E3 ubiquitin ligase triplet in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PPAT.1001011

Identification of a plant nitric oxide synthase gene involved in hormonal signaling.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PPAT.1001011

Stomatal development and patterning are regulated by environmentally responsive mitogen-activated protein kinases in Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PPAT.1001011

RPS2 of Arabidopsis thaliana: a leucine-rich repeat class of plant disease resistance genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PPAT.1001011

The A. thaliana disease resistance gene RPS2 encodes a protein containing a nucleotide-binding site and leucine-rich repeats

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PPAT.1001011

ABA-induced NO generation and stomatal closure in Arabidopsis are dependent on H2O2 synthesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PPAT.1001011

PAD4 functions upstream from salicylic acid to control defense responses in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PPAT.1001011

Arabidopsis RIN4 negatively regulates disease resistance mediated by RPS2 and RPM1 downstream or independent of the NDR1 signal modulator and is not required for the virulence functions of bacterial type III effectors AvrRpt2 or AvrRpm1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PPAT.1001011

The genetic network controlling the Arabidopsis transcriptional response to Pseudomonas syringae pv. maculicola: roles of major regulators and the phytotoxin coronatine

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PPAT.1001011

A downstream mediator in the growth repression limb of the jasmonate pathway

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PPAT.1001011

Salicylic acid induction-deficient mutants of Arabidopsis express PR-2 and PR-5 and accumulate high levels of camalexin after pathogen inoculation.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2908620

JAZ repressor proteins are targets of the SCFCOI1 complex during jasmonate signalling

30 October 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PPAT.1001011

The Arabidopsis thaliana JASMONATE INSENSITIVE 1 gene is required for suppression of salicylic acid-dependent defenses during infection by Pseudomonas syringae

21 January 2018

1 reference

12 December 2020

Allene oxide synthase: a major control point in Arabidopsis thaliana octadecanoid signalling

1 reference

12 December 2020

The cpr5 mutant of Arabidopsis expresses both NPR1-dependent and NPR1-independent resistance

1 reference

12 December 2020

RAR1 and NDR1 contribute quantitatively to disease resistance in Arabidopsis, and their relative contributions are dependent on the R gene assayed

1 reference

12 December 2020

Systems biology. Attractors and democratic dynamics

1 reference

12 December 2020

Phosphorylation of 1-aminocyclopropane-1-carboxylic acid synthase by MPK6, a stress-responsive mitogen-activated protein kinase, induces ethylene biosynthesis in Arabidopsis

1 reference

12 December 2020

FLS2: an LRR receptor-like kinase involved in the perception of the bacterial elicitor flagellin in Arabidopsis

1 reference

12 December 2020

10.1371/JOURNAL.PPAT.1001011

Identifiers

DOI

1 reference

28 July 2017

1 reference

28 July 2017

1 reference