FRODOCK: a new approach for fast rotational protein-protein docking (Q33567013)

28 July 2017

title

FRODOCK: a new approach for fast rotational protein-protein docking (English)

1 reference

28 July 2017

5

Ruben Abagyan

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Carles Pons

object named as

Carles Pons

3

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Pablo Chacón

object named as

Pablo Chacon

7

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Juan Fernández-Recio

object named as

Juan Fernandez-Recio

6

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author name string

José Ignacio Garzon

1

1 reference

28 July 2017

José Ramón Lopéz-Blanco

2

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28 July 2017

Julio Kovacs

4

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28 July 2017

language of work or name

English

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publication date

20 July 2009

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28 July 2017

number of pages

8

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based on heuristic

inferred from page(s)

published in

Bioinformatics

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28 July 2017

volume

25

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28 July 2017

issue

19

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28 July 2017

page(s)

2544-2551

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Predicting 3D structures of protein-protein complexes

28 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2800348

Recent Progress and Future Directions in Protein-Protein Docking

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2800348

A combination of rescoring and refinement significantly improves protein docking performance

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2800348

Docking and scoring protein complexes: CAPRI 3rd Edition

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2800348

Integrating statistical pair potentials into protein complex prediction

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2800348

High-resolution protein-protein docking

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2800348

Structural systems biology: modelling protein interactions.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2800348

Flexible protein-protein docking

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2800348

Protein-Protein Docking Benchmark 2.0: an update

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2800348

Assessment of CAPRI predictions in rounds 3-5 shows progress in docking procedures

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2800348

PatchDock and SymmDock: servers for rigid and symmetric docking

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2800348

Optimal clustering for detecting near-native conformations in protein docking

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2800348

Macromolecular recognition

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2800348

Electrostatics in protein-protein docking

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2800348

Protein-protein association kinetics and protein docking.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2800348

Soft protein-protein docking in internal coordinates

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2800348

Modelling protein docking using shape complementarity, electrostatics and biochemical information

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2800348

Biased probability Monte Carlo conformational searches and electrostatic calculations for peptides and proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2800348

Molecular surface recognition: determination of geometric fit between proteins and their ligands by correlation techniques

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2800348

ARVO: A Fortran package for computing the solvent accessible surface area and the excluded volume of overlapping spheres via analytic equations

21 June 2018

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTP447

ZDOCK: an initial-stage protein-docking algorithm

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTP447

Identification of protein-protein interaction sites from docking energy landscapes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTP447

Improving CAPRI predictions: optimized desolvation for rigid-body docking

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTP447

ADP_EM: fast exhaustive multi-resolution docking for high-throughput coverage

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTP447

21 January 2018

Fast rotational matching

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTP447

PIPER: an FFT-based protein docking program with pairwise potentials

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTP447

Assessment of blind predictions of protein-protein interactions: current status of docking methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTP447

ZRANK: reranking protein docking predictions with an optimized energy function

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTP447

Accelerating and focusing protein-protein docking correlations using multi-dimensional rotational FFT generating functions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTP447

Large-scale structural modeling of protein complexes at low resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTP447

pyDock: electrostatics and desolvation for effective scoring of rigid-body protein-protein docking

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2800348

Protein docking using spherical polar Fourier correlations

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2800348

Use of pair potentials across protein interfaces in screening predicted docked complexes

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2800348

Fast rotational matching of rigid bodies by fast Fourier transform acceleration of five degrees of freedom

31 October 2018

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTP447

10.1093/BIOINFORMATICS/BTP447

21 January 2018

Identifiers

DOI

1 reference

journals/bioinformatics/GarzonLPKAFC09

28 July 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

28 July 2017

1 reference