Exploring temporal transcription regulation structure of Aspergillus fumigatus in heat shock by state space model (Q33479781)

27 July 2017

title

Exploring temporal transcription regulation structure of Aspergillus fumigatus in heat shock by state space model (English)

1 reference

Putative C6 transcription factor with a predicted role in beta oxidation of fatty acids

27 July 2017

main subject

Aspergillus fumigatus

0 references

1 reference

Putative c-14 sterol reductase with a predicted role in ergosterol biosynthesis

5 February 2019

1 reference

5 February 2019

Ribosomal protein L16a

1 reference

Histone H4 arginine methyltransferase

5 February 2019

1 reference

Ortholog(s) have large ribosomal subunit rRNA binding activity, role in cellular response to drug, rRNA processing, ribosomal large subunit biogenesis and PeBoW complex, preribosome, large subunit precursor localization

5 February 2019

1 reference

Ortholog of A. nidulans FGSC A4 : AN1288, A. niger CBS 513.88 : An08g01580, A. oryzae RIB40 : AO090012000866, Aspergillus wentii : Aspwe1_0036503 and Aspergillus sydowii : Aspsy1_0025457

5 February 2019

1 reference

Putative adenosylhomocysteinase

5 February 2019

1 reference

Heat shock protein/chaperonin

5 February 2019

1 reference

Predicted adhesin-like protein

5 February 2019

1 reference

Ortholog of A. nidulans FGSC A4 : AN0833, A. oryzae RIB40 : AO095005001239, Aspergillus wentii : Aspwe1_0171773, Aspergillus sydowii : Aspsy1_0139633 and Aspergillus terreus NIH2624 : ATET_00857

5 February 2019

1 reference

Ortholog(s) have ATPase activity, misfolded protein binding activity, role in cellular response to misfolded protein, protein refolding, protein unfolding and cytosol, nuclear envelope localization

5 February 2019

1 reference

Putative DEAD box RNA helicase

5 February 2019

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Ortholog(s) have cytosol, nuclear envelope, nuclear periphery localization

5 February 2019

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5 February 2019

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5 February 2019

Putative glutathione S-transferase

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UDP-glucose dehydrogenase

5 February 2019

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Has domain(s) with predicted UDP-N-acetylmuramate dehydrogenase activity, flavin adenine dinucleotide binding, oxidoreductase activity and role in oxidation-reduction process

5 February 2019

1 reference

Ortholog of A. fumigatus Af293 : Afu7g06340, A. niger CBS 513.88 : An01g11590, An01g01670, A. oryzae RIB40 : AO095009500035 and Aspergillus wentii : Aspwe1_0027365, Aspwe1_0046529

5 February 2019

1 reference

Putative sterol delta 5,6-desaturase with a predicted role in ergosterol biosynthesis

5 February 2019

1 reference

Putative peptidyl-prolyl cis-trans isomerase

5 February 2019

1 reference

Ortholog(s) have role in mRNA cis splicing, via spliceosome and mitochondrion, nuclear telomeric heterochromatin localization

5 February 2019

1 reference

Putative inosine 5'-monophosphate (IMP) dehydrogenase

5 February 2019

1 reference

Putative alpha, alpha-trehalose phosphate synthase subunit

5 February 2019

1 reference

Putative maltose permease

5 February 2019

1 reference

Ortholog(s) have extracellular region localization

5 February 2019

1 reference

conserved hypothetical protein

6 February 2019

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putative 3-methyl-2-oxobutanoate dehydrogenase

6 February 2019

1 reference

protein of unknown function

6 February 2019

1 reference

Has domain(s) with predicted transferase activity, transferring acyl groups other than amino-acyl groups activity

6 February 2019

1 reference

Ortholog(s) have phosphopantothenate--cysteine ligase activity, role in acetyl-CoA biosynthetic process from pantothenate, coenzyme A biosynthetic process and CoA-synthesizing protein complex, cytosol, nucleus localization

6 February 2019

1 reference

Putative glycine-rich RNA-binding protein with a predicted role in transcription

6 February 2019

1 reference

Repeat-rich glycophosphatidylinositol (GPI)-anchored cell wall protein

6 February 2019

1 reference

Ortholog(s) have mRNA binding activity, role in rRNA processing and 90S preribosome, box C/D snoRNP complex, small-subunit processome localization

6 February 2019

1 reference

Laminin-binding protein with extracellular thaumatin domain

6 February 2019

1 reference

6 February 2019

1 reference

6 February 2019

Ortholog of A. nidulans FGSC A4 : AN4908, A. niger CBS 513.88 : An02g06530, A. oryzae RIB40 : AO095003000629, Aspergillus wentii : Aspwe1_0036953 and Aspergillus sydowii : Aspsy1_0043015

1 reference

Has domain(s) with predicted substrate-specific transmembrane transporter activity, transmembrane transporter activity, role in transmembrane transport and integral component of membrane, membrane localization

6 February 2019

1 reference

6 February 2019

Putative cytochrome b561

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Putative nucleolar protein

6 February 2019

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Putative 30-kilodalton heat shock protein

6 February 2019

1 reference

Ortholog(s) have role in nucleotide-excision repair, phosphorylation of RNA polymerase II C-terminal domain, transcription from RNA polymerase II promoter and core TFIIH complex, cytosol, holo TFIIH complex localization

6 February 2019

1 reference

Ortholog(s) have copper ion binding, primary amine oxidase activity, quinone binding activity, role in oxidation-reduction process and external side of fungal-type cell wall localization

6 February 2019

1 reference

Ortholog(s) have histone methyltransferase activity (H3-K9 specific) activity

6 February 2019

1 reference

Ortholog of A. nidulans FGSC A4 : AN10547, A. oryzae RIB40 : AO090023000968, Neosartorya fischeri NRRL 181 : NFIA_109920, Aspergillus clavatus NRRL 1 : ACLA_045540 and Aspergillus zonatus : Aspzo1_0134944

6 February 2019

1 reference

14-alpha sterol demethylase

6 February 2019

1 reference

Putative cobalamin-independent methionine synthase

6 February 2019

1 reference

Putative succinate-semialdehyde dehydrogenase

6 February 2019

1 reference

Ortholog(s) have cytosol, nucleus, ribosome localization

6 February 2019

1 reference

Fructose-1,6-bisphosphatase

6 February 2019

1 reference

Ortholog(s) have role in GINS complex assembly, double-strand break repair via break-induced replication, mitotic DNA replication initiation, mitotic DNA replication preinitiation complex assembly

6 February 2019

1 reference

Putative phosphatidyl synthase

6 February 2019

1 reference

Putative 2-oxo acid dehydrogenases acyltransferase with a predicted role in the citric acid cycle

6 February 2019

1 reference

6 February 2019

PE repeat family protein

1 reference

Ortholog of Aspergillus glaucus : Aspgl1_0079685, Aspergillus flavus NRRL 3357 : AFL2T_04060, Aspergillus versicolor : Aspve1_0080228 and Aspergillus fumigatus A1163 : AFUB_071410

6 February 2019

1 reference

6 February 2019

1 reference

6 February 2019

Putative high-affinity iron permease

1 reference

6 February 2019

1 reference

6 February 2019

Ortholog(s) have DNA binding, tricarboxylate secondary active transmembrane transporter activity and role in alpha-ketoglutarate transport, mitochondrial citrate transport, mitochondrial genome maintenance

1 reference

Ortholog(s) have mRNA binding, pseudouridine synthase activity

6 February 2019

1 reference

Putative zinc-dependent alcohol dehydrogenase, involved in ethanol fermentation

6 February 2019

1 reference

Putative isovaleryl-CoA dehydrogenase

6 February 2019

1 reference

Ortholog of Aspergillus fumigatus A1163 : AFUB_061470

6 February 2019

1 reference

Has domain(s) with predicted calcium ion binding activity

6 February 2019

1 reference

Putative RING finger protein

6 February 2019

1 reference

Ortholog of A. nidulans FGSC A4 : AN3345, AN3347, A. fumigatus Af293 : Afu5g00710, A. niger CBS 513.88 : An16g06090, An12g10000/gabA and A. oryzae RIB40 : AO090166000026, AO095005000509, AO095005001081

6 February 2019

1 reference

Ortholog of Aspergillus fumigatus A1163 : AFUB_097110

6 February 2019

1 reference

Putative isocitrate lyase with a predicted role in the glyoxylate cycle

6 February 2019

1 reference

Putative major facilitator superfamily (MFS) monosaccharide transporter

6 February 2019

1 reference

6 February 2019

Methylcitrate synthase

1 reference

2-methylcitrate dehydratase

6 February 2019

1 reference

Putative integral plasma membrane heat shock protein

6 February 2019

1 reference

Putative phosphoenolpyruvate carboxykinase

6 February 2019

1 reference

Ortholog(s) have cytosol localization

6 February 2019

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Ortholog(s) have role in hyphal growth and cytosol, mitochondrion localization

6 February 2019

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Ortholog(s) have mitochondrion localization

6 February 2019

1 reference

Ortholog(s) have cytosol, nuclear envelope, nuclear membrane, nuclear periphery, nucleolus localization

6 February 2019

1 reference

Ortholog(s) have unfolded protein binding activity, role in ribosome biogenesis and cytosol, nucleolus localization

6 February 2019

1 reference

Putative zinc finger protein

6 February 2019

1 reference

Putative ATP citrate lyase, subunit 1

6 February 2019

1 reference

Putative ATP citrate lyase subunit

6 February 2019

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Putative aldehyde dehydrogenase

6 February 2019

1 reference

6 February 2019

Putative dynamin GTPase

1 reference

Putative C6 transcription factor

6 February 2019

1 reference

Putative acetyl-CoA acetyltransferase

6 February 2019

1 reference

Putative alcohol dehydrogenase involved in ethanol metabolism

6 February 2019

1 reference

Putative squalene synthetase

6 February 2019

1 reference

Ortholog of Neosartorya fischeri NRRL 181 : NFIA_115320 and Aspergillus fumigatus A1163 : AFUB_089140

6 February 2019

1 reference

Ortholog(s) have enzyme activator activity, telomerase inhibitor activity, role in box C/D snoRNA 3'-end processing, negative regulation of telomere maintenance via telomerase and nucleolus, nucleoplasm localization

6 February 2019

1 reference

Putative siderophore transporter

6 February 2019

1 reference

MgtC/SapB family membrane protein

6 February 2019

1 reference

Ortholog(s) have nucleolus localization

6 February 2019

1 reference

protein of unknown function

6 February 2019

1 reference

Putative theta class glutathione transferase

6 February 2019

1 reference

6 February 2019

Putative phospholipase D

1 reference

6 February 2019

Putative Hsp70 chaperone

1 reference

Putative C6 transcription factor with a predicted role in beta oxidation of fatty acids

6 February 2019

1 reference

6 February 2019

Jin Hwan Do

1

1 reference

27 July 2017

Rui Yamaguchi

series ordinal

2

1 reference

27 July 2017

Satoru Miyano

series ordinal

3

1 reference

27 July 2017

language of work or name

English

0 references

publication date

8 July 2009

1 reference

27 July 2017

1 reference

27 July 2017

volume

10

1 reference

27 July 2017

page(s)

306

1 reference

describes a project that uses

27 July 2017

Cytoscape

object named as

Cytoscape

2 references

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

based on heuristic

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714559

Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus

21 June 2018

1 reference

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Identifying dynamical modules from genetic regulatory systems: applications to the segment polarity network

21 June 2018

1 reference

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Correlation between structure and temperature in prokaryotic metabolic networks

21 June 2018

1 reference

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21 June 2018

1 reference

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Modular organization of protein interaction networks

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714559

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21 June 2018

1 reference

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21 June 2018

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21 June 2018

1 reference

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Modeling and simulation of genetic regulatory systems: a literature review

21 June 2018

1 reference

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21 June 2018

1 reference

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21 June 2018

1 reference

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Aspergillus fumigatus and aspergillosis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2714559

Statistical inference of transcriptional module-based gene networks from time course gene expression profiles by using state space models.

21 June 2018

1 reference

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Modeling T-cell activation using gene expression profiling and state-space models

31 October 2018

1 reference

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Estimation of genetic networks and functional structures between genes by using Bayesian networks and nonparametric regression.

31 October 2018

1 reference

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Inferring qualitative relations in genetic networks and metabolic pathways

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19586549

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-10-306

1 reference

Dimensions Publication ID

27 July 2017

0 references

1 reference

27 July 2017

1 reference