Chapter 8. Methods for in silico prediction of microbial polyketide and nonribosomal peptide biosynthetic pathways from DNA sequence data (Q33431525)

26 July 2017

title

Chapter 8. Methods for in silico prediction of microbial polyketide and nonribosomal peptide biosynthetic pathways from DNA sequence data (English)

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26 July 2017

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2

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26 July 2017

1

Brian O Bachmann

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26 July 2017

language of work or name

English

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publication date

1 January 2009

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26 July 2017

published in

Methods in Enzymology

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26 July 2017

volume

458

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26 July 2017

page(s)

181-217

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Structural basis for macrolactonization by the pikromycin thioesterase

26 July 2017

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Amphotericin biosynthesis in Streptomyces nodosus: deductions from analysis of polyketide synthase and late genes

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Using genomics to deliver natural products from symbiotic bacteria

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Structural basis for the activation of phenylalanine in the non-ribosomal biosynthesis of gramicidin S

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Active-site residue, domain and module swaps in modular polyketide synthases

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Organization of the enzymatic domains in the multifunctional polyketide synthase involved in erythromycin formation in Saccharopolyspora erythraea

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Assembly-line enzymology for polyketide and nonribosomal Peptide antibiotics: logic, machinery, and mechanisms.

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Scores for sequence searches and alignments

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7 January 2021

Type II polyketide synthases: gaining a deeper insight into enzymatic teamwork

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7 January 2021

The biosynthesis, molecular genetics and enzymology of the polyketide-derived metabolites

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Benzodiazepine biosynthesis in Streptomyces refuineus.

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Identification and characterization of the niddamycin polyketide synthase genes from Streptomyces caelestis

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7 January 2021

Charting biologically relevant chemical space: a structural classification of natural products (SCONP)

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7 January 2021

Compound library development guided by protein structure similarity clustering and natural product structure

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7 January 2021

Structural and functional characterization of gene clusters directing nonribosomal synthesis of bioactive cyclic lipopeptides in Bacillus amyloliquefaciens strain FZB42

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Characterization of the saframycin A gene cluster from Streptomyces lavendulae NRRL 11002 revealing a nonribosomal peptide synthetase system for assembling the unusual tetrapeptidyl skeleton in an iterative manner

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BLAST: at the core of a powerful and diverse set of sequence analysis tools

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7 January 2021

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7 January 2021

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7 January 2021

Improved tools for biological sequence comparison

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7 January 2021

Substrate specificity of the acyl transferase domains of EpoC from the epothilone polyketide synthase

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7 January 2021

Phylogenetic analysis of condensation domains in NRPS sheds light on their functional evolution

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7 January 2021

Specificity prediction of adenylation domains in nonribosomal peptide synthetases (NRPS) using transductive support vector machines (TSVMs)

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7 January 2021

Polyketide biosynthesis beyond the type I, II and III polyketide synthase paradigms

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7 January 2021

Cloning and characterization of the bleomycin biosynthetic gene cluster from Streptomyces verticillus ATCC15003.

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7 January 2021

The type I fatty acid and polyketide synthases: a tale of two megasynthases

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7 January 2021

Identification of common molecular subsequences

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7 January 2021

The specificity-conferring code of adenylation domains in nonribosomal peptide synthetases

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7 January 2021

Polyketide biosynthesis: a millennium review

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7 January 2021

Crystal structure of the termination module of a nonribosomal peptide synthetase

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7 January 2021

Identification of protein sequence homology by consensus template alignment

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7 January 2021

Non-colinear polyketide biosynthesis in the aureothin and neoaureothin pathways: an evolutionary perspective

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7 January 2021

Computational approach for prediction of domain organization and substrate specificity of modular polyketide synthases

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7 January 2021

SEARCHPKS: A program for detection and analysis of polyketide synthase domains.

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7 January 2021

10.1016/S0076-6879(09)04808-3

Identifiers

DOI

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release_w2yp57iambh67c3l5t6h4zsxom

26 July 2017

Fatcat ID

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Fatcat

https://api.fatcat.wiki/v0/release/w2yp57iambh67c3l5t6h4zsxom

24 November 2022

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