Genome-wide analysis of factors affecting transcription elongation and DNA repair: a new role for PAF and Ccr4-not in transcription-coupled repair. (Q33406244)

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English	Genome-wide analysis of factors affecting transcription elongation and DNA repair: a new role for PAF and Ccr4-not in transcription-coupled repair.	scientific article

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20 January 2020

Genome-wide analysis of factors affecting transcription elongation and DNA repair: a new role for PAF and Ccr4-not in transcription-coupled repair (English)

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20 January 2020

Hélène Gaillard

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20 January 2020

Cristina González-Aguilera

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20 January 2020

María L García-Rubio

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20 January 2020

Alfonso Rodríguez-Gil

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20 January 2020

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20 January 2020

José L. Revuelta

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20 January 2020

Sebastián Chávez

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20 January 2020

Andrés Aguilera

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20 January 2020

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Cristina Tous

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20 January 2020

Javier Botet

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20 January 2020

Maria José Quintero

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20 January 2020

Laia Viladevall

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20 January 2020

Antonio Marín

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6 February 2009

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20 January 2020

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20 January 2020

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20 January 2020

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20 January 2020

e1000364

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20 January 2020

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Creative Commons Attribution 4.0 International

6 February 2009

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The THP1-SAC3-SUS1-CDC31 complex works in transcription elongation-mRNA export preventing RNA-mediated genome instability.

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21 June 2018

Direct interactions between the Paf1 complex and a cleavage and polyadenylation factor are revealed by dissociation of Paf1 from RNA polymerase II.

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21 June 2018

Histone ubiquitination: triggering gene activity

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A chemical genomic screen in Saccharomyces cerevisiae reveals a role for diphthamidation of translation elongation factor 2 in inhibition of protein synthesis by sordarin

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Mediator complexes and eukaryotic transcription regulation: an overview

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The SAGA continues: expanding the cellular role of a transcriptional co-activator complex

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21 June 2018

A new connection of mRNP biogenesis and export with transcription-coupled repair

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21 June 2018

Yeast Rpb9 plays an important role in ubiquitylation and degradation of Rpb1 in response to UV-induced DNA damage

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21 June 2018

CAF1 plays an important role in mRNA deadenylation separate from its contact to CCR4.

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21 June 2018

Regulation of histone H3K4 tri-methylation and PAF complex recruitment by the Ccr4-Not complex

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21 June 2018

Contending with transcriptional arrest during RNAPII transcript elongation

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21 June 2018

Methylation of histone H3 lysine-79 by Dot1p plays multiple roles in the response to UV damage in Saccharomyces cerevisiae.

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21 June 2018

Ccr4 contributes to tolerance of replication stress through control of CRT1 mRNA poly(A) tail length

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21 June 2018

Evidence that the transcription elongation function of Rpb9 is involved in transcription-coupled DNA repair in Saccharomyces cerevisiae

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21 June 2018

Diverse roles for histone H2A modifications in DNA damage response pathways in yeast

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21 June 2018

Breaking barriers to transcription elongation

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21 June 2018

The yeast Ccr4-Not complex controls ubiquitination of the nascent-associated polypeptide (NAC-EGD) complex

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21 June 2018

Bur1/Bur2 and the Ctk complex in yeast: the split personality of mammalian P-TEFb

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21 June 2018

Terminating the transcript: breaking up is hard to do.

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21 June 2018

Genome-wide occupancy profile of mediator and the Srb8-11 module reveals interactions with coding regions

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21 June 2018

Roles for Gcn5p and Ada2p in transcription and nucleotide excision repair at the Saccharomyces cerevisiae MET16 gene

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21 June 2018

Initiation of DNA repair mediated by a stalled RNA polymerase IIO.

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21 June 2018

The Bur1/Bur2 complex is required for histone H2B monoubiquitination by Rad6/Bre1 and histone methylation by COMPASS.

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21 June 2018

DNA damage and replication stress induced transcription of RNR genes is dependent on the Ccr4-Not complex.

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21 June 2018

A Requirement for the Saccharomyces cerevisiae Paf1 complex in snoRNA 3' end formation

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21 June 2018

Recognition of RNA polymerase II and transcription bubbles by XPG, CSB, and TFIIH: insights for transcription-coupled repair and Cockayne Syndrome

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21 June 2018

Genome-wide requirements for resistance to functionally distinct DNA-damaging agents

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21 June 2018

Transcription-coupled repair: a complex affair

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21 June 2018

Rules of engagement: co-transcriptional recruitment of pre-mRNA processing factors

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21 June 2018

Distinction and relationship between elongation rate and processivity of RNA polymerase II in vivo

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H2B ubiquitin protease Ubp8 and Sgf11 constitute a discrete functional module within the Saccharomyces cerevisiae SAGA complex.

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21 June 2018

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The DNA damage checkpoint response requires histone H2B ubiquitination by Rad6-Bre1 and H3 methylation by Dot1.

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21 June 2018

Histone H2B ubiquitylation is associated with elongating RNA polymerase II

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21 June 2018

Ccr4-not complex mRNA deadenylase activity contributes to DNA damage responses in Saccharomyces cerevisiae

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Members of the SAGA and Mediator complexes are partners of the transcription elongation factor TFIIS.

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21 June 2018

The eukaryotic Ccr4-not complex: a regulatory platform integrating mRNA metabolism with cellular signaling pathways?

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Cells have distinct mechanisms to maintain protection against different reactive oxygen species: oxidative-stress-response genes

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21 June 2018

Molecular evidence indicating that the yeast PAF complex is required for transcription elongation

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21 June 2018

Bur1 kinase is required for efficient transcription elongation by RNA polymerase II.

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21 June 2018

The CCR4-NOT complex plays diverse roles in mRNA metabolism

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21 June 2018

The Paf1 complex is essential for histone monoubiquitination by the Rad6-Bre1 complex, which signals for histone methylation by COMPASS and Dot1p

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2629578

21 June 2018

The Paf1 complex is required for histone H3 methylation by COMPASS and Dot1p: linking transcriptional elongation to histone methylation

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21 June 2018

Molecular evidence for a positive role of Spt4 in transcription elongation

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21 June 2018

A genome-wide screen for methyl methanesulfonate-sensitive mutants reveals genes required for S phase progression in the presence of DNA damage

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21 June 2018

Rpb4 and Rpb9 mediate subpathways of transcription-coupled DNA repair in Saccharomyces cerevisiae

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The yeast THO complex and mRNA export factors link RNA metabolism with transcription and genome instability

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E. coli Transcription repair coupling factor (Mfd protein) rescues arrested complexes by promoting forward translocation

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21 June 2018

The Paf1 complex physically and functionally associates with transcription elongation factors in vivo

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21 June 2018

CCR4, a 3'-5' poly(A) RNA and ssDNA exonuclease, is the catalytic component of the cytoplasmic deadenylase

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21 June 2018

A Rad26-Def1 complex coordinates repair and RNA pol II proteolysis in response to DNA damage

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21 June 2018

Mechanisms of transcription-coupled DNA repair

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2629578

21 June 2018

Requirement for yeast RAD26, a homolog of the human CSB gene, in elongation by RNA polymerase II

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21 June 2018

Hpr1 is preferentially required for transcription of either long or G C-rich DNA sequences in Saccharomyces cerevisiae.

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21 June 2018

Genetic evidence supports a role for the yeast CCR4-NOT complex in transcriptional elongation.

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21 June 2018

The Saccharomyces cerevisiae RAD9 cell cycle checkpoint gene is required for optimal repair of UV-induced pyrimidine dimers in both G(1) and G(2)/M phases of the cell cycle

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21 June 2018

The transcription factor associated Ccr4 and Caf1 proteins are components of the major cytoplasmic mRNA deadenylase in Saccharomyces cerevisiae

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21 June 2018

Spt4 modulates Rad26 requirement in transcription-coupled nucleotide excision repair

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21 June 2018

Transcription-coupled DNA repair in yeast transcription factor IIE (TFIIE) mutants

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21 June 2018

A complex containing RNA polymerase II, Paf1p, Cdc73p, Hpr1p, and Ccr4p plays a role in protein kinase C signaling

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21 June 2018

Defective Kin28, a subunit of yeast TFIIH, impairs transcription-coupled but not global genome nucleotide excision repair.

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21 June 2018

The Saccharomyces cerevisiae RAD9, RAD17, RAD24 and MEC3 genes are required for tolerating irreparable, ultraviolet-induced DNA damage

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21 June 2018

Ultraviolet radiation-induced ubiquitination and proteasomal degradation of the large subunit of RNA polymerase II. Implications for transcription-coupled DNA repair

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21 June 2018

Cockayne syndrome group B protein enhances elongation by RNA polymerase II

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21 June 2018

RAD26, the functional S. cerevisiae homolog of the Cockayne syndrome B gene ERCC6.

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21 June 2018

The structure and function of RAD6 and RAD18 DNA repair genes of Saccharomyces cerevisiae

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21 June 2018

The genetic defect in Cockayne syndrome is associated with a defect in repair of UV-induced DNA damage in transcriptionally active DNA.

1 reference

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21 June 2018

DNA damage-induced Def1-RNA polymerase II interaction and Def1 requirement for polymerase ubiquitylation in vitro

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21 January 2018

Multiple mechanisms confining RNA polymerase II ubiquitylation to polymerases undergoing transcriptional arrest

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https://api.crossref.org/works/10.1371/JOURNAL.PGEN.1000364

21 January 2018

Screening the yeast "disruptome" for mutants affecting resistance to the immunosuppressive drug, mycophenolic acid

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PGEN.1000364

21 January 2018

Gcn5 promotes acetylation, eviction, and methylation of nucleosomes in transcribed coding regions.

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PGEN.1000364

21 January 2018

H2B ubiquitylation plays a role in nucleosome dynamics during transcription elongation

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PGEN.1000364

21 January 2018

A posttranscriptional role for the yeast Paf1-RNA polymerase II complex is revealed by identification of primary targets.

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PGEN.1000364

21 January 2018

Histone acetylation, chromatin remodelling, transcription and nucleotide excision repair in S. cerevisiae: studies with two model genes

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PGEN.1000364

21 January 2018

Phenotypic analysis of Paf1/RNA polymerase II complex mutations reveals connections to cell cycle regulation, protein synthesis, and lipid and nucleic acid metabolism

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PGEN.1000364

21 January 2018

A simple in vivo assay for measuring the efficiency of gene length-dependent processes in yeast mRNA biogenesis

1 reference

https://pubmed.ncbi.nlm.nih.gov/19197357

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1371/JOURNAL.PGEN.1000364

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19197357 AND SRC:MED&resulttype=core&format=json

20 January 2020

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19197357 AND SRC:MED&resulttype=core&format=json

20 January 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19197357 AND SRC:MED&resulttype=core&format=json

20 January 2020

ResearchGate publication ID

0 references

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