HD desktop: an integrated platform for the analysis and visualization of H/D exchange data (Q33398917)

26 July 2017

title

HD desktop: an integrated platform for the analysis and visualization of H/D exchange data (English)

1 reference

26 July 2017

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Bruce D Pascal

1

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26 July 2017

Michael J Chalmers

series ordinal

2

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26 July 2017

Scott A Busby

series ordinal

3

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26 July 2017

Patrick R Griffin

series ordinal

4

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26 July 2017

publication date

6 December 2008

1 reference

Journal of the American Society for Mass Spectrometry

26 July 2017

published in

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26 July 2017

volume

20

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26 July 2017

issue

4

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26 July 2017

page(s)

601-610

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"TOF2H": a precision toolbox for rapid, high density/high coverage hydrogen-deuterium exchange mass spectrometry via an LC-MALDI approach, covering the data pipeline from spectral acquisition to HDX rate analysis

26 July 2017

cites work

1 reference

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21 June 2018

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A two-stage differential hydrogen deuterium exchange method for the rapid characterization of protein/ligand interactions.

21 June 2018

1 reference

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The Deuterator: software for the determination of backbone amide deuterium levels from H/D exchange MS data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2792908

Extraction of local hydrogen exchange data from HDX CAD MS measurements by deconvolution of isotopic distributions of fragment ions.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2792908

Semi-automated data processing of hydrogen exchange mass spectra using HX-Express

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2792908

Hydrogen exchange and mass spectrometry: A historical perspective

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2792908

Identification and characterization of EX1 kinetics in H/D exchange mass spectrometry by peak width analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2792908

Accuracy of SUPREX (stability of unpurified proteins from rates of H/D exchange) and MALDI mass spectrometry-derived protein unfolding free energies determined under non-EX2 exchange conditions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2792908

Automated extraction of backbone deuteration levels from amide H/2H mass spectrometry experiments

21 June 2018

1 reference

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Probing protein ligand interactions by automated hydrogen/deuterium exchange mass spectrometry

21 June 2018

1 reference

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XCMS: processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification

21 June 2018

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MZmine: toolbox for processing and visualization of mass spectrometry based molecular profile data

21 June 2018

1 reference

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Quantitating the statistical distribution of deuterium incorporation to extend the utility of H/D exchange MS data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2792908

A common open representation of mass spectrometry data and its application to proteomics research

21 June 2018

1 reference

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Rapid analysis of protein structure and dynamics by hydrogen/deuterium exchange mass spectrometry.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2792908

Determination of amide hydrogen exchange by mass spectrometry: a new tool for protein structure elucidation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2792908

Primary structure effects on peptide group hydrogen exchange

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2792908

A universal algorithm for fast and automated charge state deconvolution of electrospray mass-to-charge ratio spectra

21 June 2018

1 reference

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Automatic analysis of hydrogen/deuterium exchange mass spectra of peptides and proteins using calculations of isotopic distributions

21 January 2018

1 reference

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Efficient calculation of accurate masses of isotopic peaks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016/J.JASMS.2008.11.019

Distinct interaction modes of an AKAP bound to two regulatory subunit isoforms of protein kinase A revealed by amide hydrogen/deuterium exchange

21 January 2018

1 reference

https://api.crossref.org/works/10.1016/J.JASMS.2008.11.019

Modeling deuterium exchange behavior of ERK2 using pepsin mapping to probe secondary structure

21 January 2018

1 reference

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Structural mobility in human manganese superoxide dismutase

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19135386

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.JASMS.2008.11.019

1 reference

Dimensions Publication ID

26 July 2017

0 references

1 reference

26 July 2017

1 reference