Frequent toggling between alternative amino acids is driven by selection in HIV-1 (Q33394563)

26 July 2017

title

Frequent toggling between alternative amino acids is driven by selection in HIV-1 (English)

1 reference

26 July 2017

Konrad Scheffler

2

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author name string

Wayne Delport

series ordinal

1

1 reference

26 July 2017

Cathal Seoighe

series ordinal

3

1 reference

26 July 2017

publication date

19 December 2008

1 reference

26 July 2017

1 reference

26 July 2017

volume

4

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26 July 2017

issue

12

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26 July 2017

page(s)

e1000242

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Creative Commons Attribution 4.0 International

26 July 2017

copyright license

start time

19 December 2008

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Compensatory mutation partially restores fitness and delays reversion of escape mutation within the immunodominant HLA-B*5703-restricted Gag epitope in chronic human immunodeficiency virus type 1 infection

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14 July 2018

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Adaptation to Human Populations Is Revealed by Within-Host Polymorphisms in HIV-1 and Hepatitis C Virus

14 July 2018

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14 July 2018

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Evolution of the human immunodeficiency virus envelope gene is dominated by purifying selection.

14 July 2018

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14 July 2018

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14 July 2018

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14 July 2018

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Selective escape from CD8 T-cell responses represents a major driving force of human immunodeficiency virus type 1 (HIV-1) sequence diversity and reveals constraints on HIV-1 evolution

14 July 2018

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14 July 2018

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Rapid viral escape at an immunodominant simian-human immunodeficiency virus cytotoxic T-lymphocyte epitope exacts a dramatic fitness cost

14 July 2018

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Transmission and accumulation of CTL escape variants drive negative associations between HIV polymorphisms and HLA.

14 July 2018

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Not so different after all: a comparison of methods for detecting amino acid sites under selection

14 July 2018

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14 July 2018

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14 July 2018

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14 July 2018

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14 July 2018

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14 July 2018

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14 July 2018

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Positive selection detection in 40,000 human immunodeficiency virus (HIV) type 1 sequences automatically identifies drug resistance and positive fitness mutations in HIV protease and reverse transcriptase

14 July 2018

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14 July 2018

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14 July 2018

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14 July 2018

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14 July 2018

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Effect of recombination on the accuracy of the likelihood method for detecting positive selection at amino acid sites.

14 July 2018

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Antibody domain exchange is an immunological solution to carbohydrate cluster recognition

14 July 2018

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14 July 2018

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Rapid evolution of the neutralizing antibody response to HIV type 1 infection

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2592544

The influence of HLA genotype on AIDS

14 July 2018

1 reference

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Immune-mediated positive selection drives human immunodeficiency virus type 1 molecular variation and predicts disease duration.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2592544

Magnitude of functional CD8 T-cell responses to the gag protein of human immunodeficiency virus type 1 correlates inversely with viral load in plasma

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2592544

Clustered mutations in HIV-1 gag are consistently required for escape from HLA-B27-restricted cytotoxic T lymphocyte responses.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2592544

Genealogical evidence for positive selection in the nef gene of HIV-1

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2592544

Specific proteolytic cleavages limit the diversity of the pool of peptides available to MHC class I molecules in living cells

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2592544

Positive selection of HIV-1 cytotoxic T lymphocyte escape variants during primary infection

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2592544

Antiviral pressure exerted by HIV-1-specific cytotoxic T lymphocytes (CTLs) during primary infection demonstrated by rapid selection of CTL escape virus

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2592544

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14 July 2018

1 reference

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A codon-based model of nucleotide substitution for protein-coding DNA sequences

14 July 2018

1 reference

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A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to the chloroplast genome

14 July 2018

1 reference

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14 July 2018

1 reference

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HIV evolution: CTL escape mutation and reversion after transmission

14 July 2018

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Human leukocyte antigen-specific polymorphisms in HIV-1 Gag and their association with viral load in chronic untreated infection

21 January 2018

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CD8 T-cell responses to different HIV proteins have discordant associations with viral load

21 January 2018

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Influence of HLA-B57 on clinical presentation and viral control during acute HIV-1 infection

21 January 2018

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Founder Effects in the Assessment of HIV Polymorphisms and HLA Allele Associations

21 January 2018

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Reversion of CTL escape–variant immunodeficiency viruses in vivo

21 January 2018

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Conflicting selective forces affect T cell receptor contacts in an immunodominant human immunodeficiency virus epitope

21 January 2018

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21 January 2018

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Dominant influence of HLA-B in mediating the potential co-evolution of HIV and HLA.

21 January 2018

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HIV-1 Nef is preferentially recognized by CD8 T cells in primary HIV-1 infection despite a relatively high degree of genetic diversity

21 January 2018

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CD4 T cell kinetics and activation in human immunodeficiency virus-infected patients who remain viremic despite long-term treatment with protease inhibitor-based therapy

21 January 2018

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A model of directional selection applied to the evolution of drug resistance in HIV-1.

21 January 2018

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Hitting HIV where it hurts: an alternative approach to HIV vaccine design.

21 January 2018

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Potential impact of recombination on sitewise approaches for detecting positive natural selection

21 January 2018

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Evidence of HIV-1 adaptation to HLA-restricted immune responses at a population level

21 January 2018

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PubMed

https://pubmed.ncbi.nlm.nih.gov/19096508

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A longitudinal study of neutralizing antibodies and disease progression in HIV-1-infected subjects

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19096508

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PPAT.1000242

1 reference

26 July 2017

1 reference

26 July 2017

1 reference