The trouble with sliding windows and the selective pressure in BRCA1. (Q33385141)

26 July 2017

title

The trouble with sliding windows and the selective pressure in BRCA1. (English)

1 reference

26 July 2017

Karl Schmid

1

1 reference

26 July 2017

Ziheng Yang

series ordinal

2

1 reference

26 July 2017

language of work or name

English

0 references

publication date

18 November 2008

1 reference

26 July 2017

1 reference

26 July 2017

volume

3

1 reference

26 July 2017

issue

11

1 reference

26 July 2017

page(s)

e3746

1 reference

Creative Commons Attribution 4.0 International

26 July 2017

copyright license

start time

18 November 2008

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

PAML 4: phylogenetic analysis by maximum likelihood

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2581807

A graphical assessment of p-values from sliding window haplotype tests of association to identify asthma susceptibility loci on chromosome 11q.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2581807

Hearing silence: non-neutral evolution at synonymous sites in mammals

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2581807

Bayes empirical bayes inference of amino acid sites under positive selection

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2581807

Accuracy and power of statistical methods for detecting adaptive evolution in protein coding sequences and for identifying positively selected sites

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2581807

Adaptive evolution of centromere proteins in plants and animals

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2581807

Ancient adaptive evolution of the primate antiviral DNA-editing enzyme APOBEC3G

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2581807

Functional divergence caused by ancient positive selection of a Drosophila hybrid incompatibility locus

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2581807

Adaptive evolution drives divergence of a hybrid inviability gene between two species of Drosophila

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2581807

Signature of balancing selection in Arabidopsis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2581807

Inference of functional regions in proteins by quantification of evolutionary constraints

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2581807

Strong diversifying selection on domains of the Plasmodium falciparum apical membrane antigen 1 gene

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2581807

Human DNA sequence variation in a 6.6-kb region containing the melanocortin 1 receptor promoter

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2581807

The interaction of protein structure, selection, and recombination on the evolution of the type-1 fimbrial major subunit (fimA) from Escherichia coli.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2581807

Adaptive evolution of Cid, a centromere-specific histone in Drosophila

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2581807

DNA polymorphism at the cytosolic phosphoglucose isomerase (PgiC) locus of the wild plant Arabidopsis thaliana

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2581807

Adaptive evolution of the tumour suppressor BRCA1 in humans and chimpanzees. Australian Breast Cancer Family Study

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2581807

Codon-substitution models for heterogeneous selection pressure at amino acid sites

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2581807

The codon-degeneracy model of molecular evolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2581807

Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2581807

Unusual haplotype structure at the proximal breakpoint of In(2L)t in a natural population of Drosophila melanogaster

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2581807

Synonymous rates at the RpII215 gene of Drosophila: variation among species and across the coding region

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2581807

DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2581807

Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2581807

Likelihood Models for Detecting Positively Selected Amino Acid Sites and Applications to the HIV-1 Envelope Gene

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2581807

A codon-based model of nucleotide substitution for protein-coding DNA sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2581807

Determination of window size for analyzing DNA sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2581807

Large-scale search for genes on which positive selection may operate

21 June 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0003746

A Sliding Window-Based Method to Detect Selective Constraints in Protein-Coding Genes and Its Application to RNA Viruses

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0003746

SWAPSC: sliding window analysis procedure to detect selective constraints

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0003746

Accuracy and power of bayes prediction of amino acid sites under positive selection

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0003746

Prediction of protein solvent accessibility using support vector machines.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0003746

A likelihood method for the detection of selection and recombination using nucleotide sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0003746

SCANMS: adjusting for multiple comparisons in sliding window neutrality tests

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0003746

K-Estimator: calculation of the number of nucleotide substitutions per site and the confidence intervals

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19015730

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Evidence for purifying selection acting on silent sites in BRCA1

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19015730

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Recombination in animal mitochondrial DNA: evidence from published sequences

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19015730

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0003746

1 reference

26 July 2017

0 references

1 reference

26 July 2017

1 reference