RAWUL: a new ubiquitin-like domain in PRC1 ring finger proteins that unveils putative plant and worm PRC1 orthologs (Q33347586)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18588675 AND SRC:MED&resulttype=core&format=json

9 January 2020

title

RAWUL: a new ubiquitin-like domain in PRC1 ring finger proteins that unveils putative plant and worm PRC1 orthologs (English)

1 reference

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9 January 2020

1

1 reference

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9 January 2020

Damien Devos

2

1 reference

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9 January 2020

Zinmay R Sung

3

1 reference

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9 January 2020

Myriam Calonje

4

1 reference

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9 January 2020

author name string

Luis Sanchez-Pulido

1

1 reference

PubMed publication ID

18588675

26 July 2017

language of work or name

English

0 references

publication date

27 June 2008

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9 January 2020

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9 January 2020

volume

9

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9 January 2020

page(s)

308

1 reference

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The UHRF family: oncogenes that are drugable targets for cancer therapy in the near future?

9 January 2020

cites work

1 reference

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Arabidopsis TFL2/LHP1 specifically associates with genes marked by trimethylation of histone H3 lysine 27.

21 June 2018

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Vernalization: a model for investigating epigenetics and eukaryotic gene regulation in plants.

21 June 2018

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Polycomb group and trithorax group proteins in Arabidopsis

21 June 2018

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Biology of polycomb and trithorax group proteins

21 June 2018

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Stealing the spotlight: CUL4-DDB1 ubiquitin ligase docks WD40-repeat proteins to destroy

21 June 2018

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Epigenetic mechanisms governing seed development in plants

21 June 2018

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Complexity beneath the silence

21 June 2018

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Polycomb response elements and targeting of Polycomb group proteins in Drosophila.

21 June 2018

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A regulated interaction with the UIM protein Eps15 implicates parkin in EGF receptor trafficking and PI(3)K-Akt signalling

21 June 2018

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The role of polycomb group proteins in cell cycle regulation during development

21 June 2018

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Structure of a Bmi-1-Ring1B polycomb group ubiquitin ligase complex

21 June 2018

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Structure and E3-ligase activity of the Ring-Ring complex of polycomb proteins Bmi1 and Ring1b

21 June 2018

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LHP1, the Arabidopsis homologue of HETEROCHROMATIN PROTEIN1, is required for epigenetic silencing of FLC

21 June 2018

1 reference

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The Universal Protein Resource (UniProt): an expanding universe of protein information

21 June 2018

1 reference

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Role of Bmi-1 and Ring1A in H2A ubiquitylation and Hox gene silencing

21 June 2018

1 reference

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Association of herpesvirus saimiri tip with lipid raft is essential for downregulation of T-cell receptor and CD4 coreceptor

21 June 2018

1 reference

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The ubiquitin domain superfold: structure-based sequence alignments and characterization of binding epitopes

21 June 2018

1 reference

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Subunit contributions to histone methyltransferase activities of fly and worm polycomb group complexes

21 June 2018

1 reference

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Scoredist: a simple and robust protein sequence distance estimator

21 June 2018

1 reference

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Epigenetic regulation of cellular memory by the Polycomb and Trithorax group proteins

21 June 2018

1 reference

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Protein homology detection by HMM-HMM comparison

21 June 2018

1 reference

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Polycomb group proteins Ring1A/B link ubiquitylation of histone H2A to heritable gene silencing and X inactivation

21 June 2018

1 reference

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Role of histone H2A ubiquitination in Polycomb silencing

21 June 2018

1 reference

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Stem cells and cancer; the polycomb connection

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447854

Structural basis of the interaction between the AAA ATPase p97/VCP and its adaptor protein p47

21 June 2018

1 reference

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The Pfam protein families database

21 June 2018

1 reference

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Solution structure of the yeast ubiquitin-like modifier protein Hub1

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447854

Distinct roles of cellular Lck and p80 proteins in herpesvirus saimiri Tip function on lipid rafts

21 June 2018

1 reference

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NMR structure of ubiquitin-like domain in PARKIN: gene product of familial Parkinson's disease

21 June 2018

1 reference

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Low free energy cost of very long loop insertions in proteins

21 June 2018

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Histone methyltransferase activity associated with a human multiprotein complex containing the Enhancer of Zeste protein

21 June 2018

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Histone methyltransferase activity of a Drosophila Polycomb group repressor complex

21 June 2018

1 reference

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Drosophila enhancer of Zeste/ESC complexes have a histone H3 methyltransferase activity that marks chromosomal Polycomb sites

21 June 2018

1 reference

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Histone methylation by the Drosophila epigenetic transcriptional regulator Ash1.

21 June 2018

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Native and recombinant polycomb group complexes establish a selective block to template accessibility to repress transcription in vitro.

21 June 2018

1 reference

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Role of histone H3 lysine 27 methylation in Polycomb-group silencing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447854

Herpesviral protein targets a cellular WD repeat endosomal protein to downregulate T lymphocyte receptor expression

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447854

Regulation of the different chromatin states of autosomes and X chromosomes in the germ line of C. elegans

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447854

From UBA to UBX: new words in the ubiquitin vocabulary.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447854

Unraveling hot spots in binding interfaces: progress and challenges

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447854

Statistical potentials for fold assessment.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447854

The X-ray crystal structure and putative ligand-derived peptide binding properties of gamma-aminobutyric acid receptor type A receptor-associated protein

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447854

Protein repeats: structures, functions, and evolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447854

Solution structure and interaction surface of the C-terminal domain from p47: a major p97-cofactor involved in SNARE disassembly

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447854

The UBX domain: a widespread ubiquitin-like module

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447854

Identification of ubiquilin, a novel presenilin interactor that increases presenilin protein accumulation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447854

T-Coffee: A novel method for fast and accurate multiple sequence alignment

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447854

Ubiquitin and its kin: how close are the family ties?

21 June 2018

1 reference

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Polycomb group protein complexes: do different complexes regulate distinct target genes?

21 June 2018

1 reference

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Stabilization of chromatin structure by PRC1, a Polycomb complex

21 June 2018

1 reference

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The Drosophila polycomb group protein Psc contacts ph and Pc through specific conserved domains

21 June 2018

1 reference

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

21 June 2018

1 reference

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Identification of Bmi1-interacting proteins as constituents of a multimeric mammalian polycomb complex

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447854

21 June 2018

1 reference

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PHD: predicting one-dimensional protein structure by profile-based neural networks

21 June 2018

1 reference

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Using CLUSTAL for multiple sequence alignments

21 June 2018

1 reference

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Dali: a network tool for protein structure comparison

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447854

Comparative protein modelling by satisfaction of spatial restraints

21 June 2018

1 reference

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The immunoglobulin fold. Structural classification, sequence patterns and common core

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447854

The neighbor-joining method: a new method for reconstructing phylogenetic trees

21 June 2018

1 reference

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21 June 2018

1 reference

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Drosophila genes Posterior Sex Combs and Suppressor two of zeste encode proteins with homology to the murine bmi-1 oncogene

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447854

Structure of a diubiquitin conjugate and a model for interaction with ubiquitin conjugating enzyme (E2)

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447854

EMBRYONIC FLOWER1 participates in polycomb group-mediated AG gene silencing in Arabidopsis.

21 June 2018

1 reference

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A disease state mutation unfolds the parkin ubiquitin-like domain.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447854

Polycomb Group proteins: an evolutionary perspective.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447854

The Arabidopsis LHP1 protein colocalizes with histone H3 Lys27 trimethylation

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447854

Protein domain-domain interactions and requirements for the negative regulation of Arabidopsis CDC48/p97 by the plant ubiquitin regulatory X (UBX) domain-containing protein, PUX1.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447854

Constitutive expression exposes functional redundancy between the Arabidopsis histone H2A gene HTA1 and other H2A gene family members.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447854

RNA-binding proteins SOP-2 and SOR-1 form a novel PcG-like complex in C. elegans

31 October 2018

1 reference

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Functional analysis of the RING-type ubiquitin ligase family of Arabidopsis.

31 October 2018

1 reference

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Convergent evolution of domain architectures (is rare).

31 October 2018

1 reference

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The MES-2/MES-3/MES-6 complex and regulation of histone H3 methylation in C. elegans

31 October 2018

1 reference

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The C. elegans Polycomb gene SOP-2 encodes an RNA binding protein

31 October 2018

1 reference

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The Drosophila Polycomb group gene Sex combs extra encodes the ortholog of mammalian Ring1 proteins.

31 October 2018

1 reference

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Molecular and genetic analysis of the Polycomb group gene Sex combs extra/Ring in Drosophila

31 October 2018

1 reference

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Reconstitution of a functional core polycomb repressive complex.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447854

Homology-based method for identification of protein repeats using statistical significance estimates.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447854

Benchmarking secondary structure prediction for fold recognition

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447854

Ring1b-mediated H2A ubiquitination associates with inactive X chromosomes and is involved in initiation of X inactivation

31 October 2018

1 reference

12 December 2020

High incidence of ubiquitin-like domains in human ubiquitin-specific proteases

1 reference

12 December 2020

The isolated C-terminal domain of Ring1B is a dimer made of stable, well-structured monomers

1 reference

12 December 2020

Distribution of ubiquitinated histone H2A during plant cell differentiation in maize root and dedifferentiation in callus culture.

1 reference

12 December 2020

Confidence Limits on Phylogenies: an Approach using the Bootstrap

1 reference

12 December 2020

Comparison of the three-dimensional structures of human, yeast, and oat ubiquitin

1 reference

12 December 2020

The Immunoglobulin Fold

1 reference

12 December 2020

Identifiers

DOI

10.1186/1471-2164-9-308

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18588675 AND SRC:MED&resulttype=core&format=json

Dimensions Publication ID

9 January 2020

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-9-308

9 September 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18588675 AND SRC:MED&resulttype=core&format=json

9 January 2020

PubMed publication ID

18588675

1 reference