See me, feel me: methods to concurrently visualize and manipulate single DNA molecules and associated proteins (Q33347424)

26 July 2017

3 references

2 August 2019

19 September 2019

11 December 2019

See me, feel me: methods to concurrently visualize and manipulate single DNA molecules and associated proteins (English)

1 reference

biomedical investigative technique

26 July 2017

1 reference

2 August 2019

1 reference

19 September 2019

1 reference

11 December 2019

1

Joost van Mameren

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author name string

Erwin J G Peterman

series ordinal

2

1 reference

26 July 2017

Gijs J L Wuite

series ordinal

3

1 reference

26 July 2017

language of work or name

English

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publication date

27 June 2008

1 reference

26 July 2017

1 August 2008

3 references

2 August 2019

19 September 2019

11 December 2019

Nucleic Acids Research

4 references

26 July 2017

2 August 2019

19 September 2019

11 December 2019

36

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26 July 2017

issue

13

1 reference

26 July 2017

page(s)

4381-4389

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Creative Commons Attribution-NonCommercial

26 July 2017

copyright license

3 references

2 August 2019

19 September 2019

11 December 2019

Combining optical trapping and single-molecule fluorescence spectroscopy: enhanced photobleaching of fluorophores

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2490750

Laminar flow cells for single-molecule studies of DNA-protein interactions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2490750

Recent advances in optical tweezers

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2490750

RecBCD enzyme switches lead motor subunits in response to chi recognition

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2490750

Visualizing single DNA-bound proteins using DNA as a scanning probe

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2490750

Real-time observations of single bacteriophage lambda DNA ejections in vitro

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2490750

Single-molecule analysis of 1D diffusion and transcription elongation of T7 RNA polymerase along individual stretched DNA molecules

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2490750

A survey of single-molecule techniques in chemical biology

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2490750

Strategies to improve photostabilities in ultrasensitive fluorescence spectroscopy

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2490750

Honey, I shrunk the DNA: DNA length as a probe for nucleic-acid enzyme activity.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2490750

Direct observation of individual RecA filaments assembling on single DNA molecules

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2490750

A simple DNA stretching method for fluorescence imaging of single DNA molecules

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2490750

Dissecting elastic heterogeneity along DNA molecules coated partly with Rad51 using concurrent fluorescence microscopy and optical tweezers

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2490750

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2490750

Interlaced optical force-fluorescence measurements for single molecule biophysics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2490750

The fluorescent toolbox for assessing protein location and function

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2490750

A base-excision DNA-repair protein finds intrahelical lesion bases by fast sliding in contact with DNA.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2490750

Optical trap stiffness in the presence and absence of spherical aberrations

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2490750

DNA primase acts as a molecular brake in DNA replication

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2490750

Long-distance lateral diffusion of human Rad51 on double-stranded DNA.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2490750

Direct observation of base-pair stepping by RNA polymerase

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2490750

Detection of single DNA molecules by multicolor quantum-dot end-labeling

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2490750

Quantum dot bioconjugates for imaging, labelling and sensing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2490750

DNA-tension dependence of restriction enzyme activity reveals mechanochemical properties of the reaction pathway

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2490750

Simultaneous, coincident optical trapping and single-molecule fluorescence

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2490750

Single DNA molecule analysis: applications of molecular combing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2490750

Mechanical processes in biochemistry

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2490750

How do site-specific DNA-binding proteins find their targets?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2490750

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2490750

Combined optical trapping and single-molecule fluorescence

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2490750

Observation by fluorescence microscopy of transcription on single combed DNA

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2490750

Precise nanometer localization analysis for individual fluorescent probes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2490750

Total internal reflection fluorescence microscopy in cell biology

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2490750

Grabbing the cat by the tail: manipulating molecules one by one.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2490750

Processive translocation and DNA unwinding by individual RecBCD enzyme molecules

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2490750

An integrated laser trap/flow control video microscope for the study of single biomolecules

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2490750

Single-molecule study of transcriptional pausing and arrest by E. coli RNA polymerase

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2490750

Single-molecule studies of the effect of template tension on T7 DNA polymerase activity.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2490750

Tying a molecular knot with optical tweezers

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2490750

Single-molecule imaging of RNA polymerase-DNA interactions in real time

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2490750

The dynamics of partially extended single molecules of DNA.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2490750

Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2490750

Single- and double-strand photocleavage of DNA by YO, YOYO and TOTO

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2490750

The elasticity of a single supercoiled DNA molecule

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2490750

Alignment and Sensitive Detection of DNA by a Moving Interface

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2490750

The interaction of intercalating drugs with nucleic acids

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2490750

Direct mechanical measurements of the elasticity of single DNA molecules by using magnetic beads

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2490750

Decreased resistance to bacterial infection and granulocyte defects in IAP-deficient mice.

21 June 2018

1 reference

Single-molecule kinetics of lambda exonuclease reveal base dependence and dynamic disorder

21 January 2018

1 reference

Relaxation of a single DNA molecule observed by optical microscopy.

21 January 2018

1 reference

Direct visualization of RecBCD movement reveals cotranslocation of the RecD motor after chi recognition

21 January 2018

1 reference

Single-molecule manipulation of double-stranded DNA using optical tweezers: interaction studies of DNA with RecA and YOYO-1.

21 January 2018

1 reference

Simultaneous observation of individual ATPase and mechanical events by a single myosin molecule during interaction with actin.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2490750

Direct observation of tube-like motion of a single polymer chain

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2490750

Fluorescent Human RAD51 Reveals Multiple Nucleation Sites and Filament Segments Tightly Associated along a Single DNA Molecule

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2490750

Transverse fluctuations of single DNA molecules attached at both extremities to a surface

31 October 2018

1 reference

12 December 2020

Quantifying force-dependent and zero-force DNA intercalation by single-molecule stretching

1 reference

12 December 2020

Organized arrays of individual DNA molecules tethered to supported lipid bilayers

1 reference

12 December 2020

Stretching DNA with a receding meniscus: Experiments and models

1 reference

12 December 2020

Dynamics of a tethered polymer in shear flow

1 reference

12 December 2020

Measurement of lactose repressor-mediated loop formation and breakdown in single DNA molecules

1 reference

12 December 2020

Stretching of a single tethered polymer in a uniform flow

1 reference

12 December 2020

Real-time imaging of DNA ejection from single phage particles

1 reference

12 December 2020

Visualizing the assembly of human Rad51 filaments on double-stranded DNA

1 reference

12 December 2020

A molecular throttle: the recombination hotspot chi controls DNA translocation by the RecBCD helicase

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKN412

1 reference

26 July 2017

1 reference

26 July 2017

1 reference