Having it both ways: transcription factors that bind DNA and RNA. (Q33337762)

25 July 2017

1 reference

title

Having it both ways: transcription factors that bind DNA and RNA. (English)

1 reference

25 July 2017

Laura A Cassiday

1

1 reference

25 July 2017

L James Maher

series ordinal

2

1 reference

25 July 2017

language of work or name

English

0 references

publication date

1 October 2002

1 reference

25 July 2017

published in

Nucleic Acids Research

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25 July 2017

volume

30

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25 July 2017

issue

19

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25 July 2017

page(s)

4118-4126

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Mammalian expression cloning of two human trophoblast suppressors of major histocompatibility complex genes

25 July 2017

cites work

1 reference

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Identification of an RNA binding specificity for the potential splicing factor TLS

21 June 2018

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Nucleotide-sequence-specific and non-specific interactions of T4 DNA polymerase with its own mRNA.

21 June 2018

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In vitro selection of an RNA sequence that interacts with high affinity with thymidylate synthase

21 June 2018

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p53 binds selectively to the 5' untranslated region of cdk4, an RNA element necessary and sufficient for transforming growth factor beta- and p53-mediated translational inhibition of cdk4.

21 June 2018

1 reference

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6S RNA regulates E. coli RNA polymerase activity

21 June 2018

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A reverse transcriptase/maturase promotes splicing by binding at its own coding segment in a group II intron RNA.

21 June 2018

1 reference

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Crystal structure of the Zalpha domain of the human editing enzyme ADAR1 bound to left-handed Z-DNA

21 June 2018

1 reference

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21 June 2018

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Identification of RNAs that bind to a specific protein using the yeast three-hybrid system

21 June 2018

1 reference

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Selection and characterization of an RNA decoy for transcription factor NF-kappa B.

21 June 2018

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Repression of major histocompatibility complex genes by a human trophoblast ribonucleic acid

21 June 2018

1 reference

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Spectroscopic characterization of a DNA-binding domain, Z alpha, from the editing enzyme, dsRNA adenosine deaminase: evidence for left-handed Z-DNA in the Z alpha-DNA complex

21 June 2018

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TLS/FUS, a pro-oncogene involved in multiple chromosomal translocations, is a novel regulator of BCR/ABL-mediated leukemogenesis

21 June 2018

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Differing roles for zinc fingers in DNA recognition: structure of a six-finger transcription factor IIIA complex

21 June 2018

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Functional activation of p53 via phosphorylation following DNA damage by UV but not gamma radiation

21 June 2018

1 reference

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Reciprocal Interference between the Sequence-Specific Core and Nonspecific C-Terminal DNA Binding Domains of p53: Implications for Regulation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140532

A protein encoded by a group I intron in Aspergillus nidulans directly assists RNA splicing and is a DNA endonuclease

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140532

Participation of the human p53 3′UTR in translational repression and activation following γ-irradiation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140532

Cytoplasmic p53 polypeptide is associated with ribosomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140532

The murine C'-terminally alternatively spliced form of p53 induces attenuated apoptosis in myeloid cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140532

The role of thymidylate synthase as an RNA binding protein

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140532

Translational regulation of human p53 gene expression.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140532

A three-hybrid system to detect RNA-protein interactions in vivo

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140532

Casein kinase 2 inhibits the renaturation of complementary DNA strands mediated by p53 protein.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140532

p53 and translational control

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140532

RNA binding and translational suppression by bicoid

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140532

RNA recognition and translational regulation by a homeodomain protein.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140532

Role of TFIIIA zinc fingers in vivo: analysis of single-finger function in developing Xenopus embryos

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140532

Translational repression by the bacteriophage T4 gene 32 protein involves specific recognition of an RNA pseudoknot structure

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140532

The p21 Cdk-interacting protein Cip1 is a potent inhibitor of G1 cyclin-dependent kinases

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140532

Endogenous p53 protein generated from wild-type alternatively spliced p53 RNA in mouse epidermal cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140532

The ribosomal L5 protein is associated with mdm-2 and mdm-2-p53 complexes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140532

Subnuclear localization of WT1 in splicing or transcription factor domains is regulated by alternative splicing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140532

p53-catalyzed annealing of complementary single-stranded nucleic acids

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140532

Negative feedback regulation of wild-type p53 biosynthesis.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140532

Alternatively spliced forms in the carboxy-terminal domain of the p53 protein regulate its ability to promote annealing of complementary single strands of nucleic acids

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140532

A control region in the center of the 5S RNA gene directs specific initiation of transcription: I. The 5' border of the region

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140532

A specific transcription factor that can bind either the 5S RNA gene or 5S RNA

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140532

Nucleotide sequences involved in bacteriophage T4 gene 32 translational self-regulation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140532

Specific interaction of a purified transcription factor with an internal control region of 5S RNA genes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140532

5S RNA structure and interaction with transcription factor A. 1. Ribonuclease probe of the structure of 5S RNA from Xenopus laevis oocytes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140532

Sex determination in the nematode C. elegans: analysis of tra-3 suppressors and characterization of fem genes.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140532

Xenopus transcription factor IIIA binds primarily at junctions between double helical stems and internal loops in oocyte 5S RNA.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140532

TFIIIA binds to different domains of 5S RNA and the Xenopus borealis 5S RNA gene

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140532

A genetic analysis of the sex-determining gene, tra-1, in the nematode Caenorhabditis elegans

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140532

A 5S rRNA/L5 complex is a precursor to ribosome assembly in mammalian cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140532

Autogenous regulatory site on the bacteriophage T4 gene 32 messenger RNA.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140532

Meth A fibrosarcoma cells express two transforming mutant p53 species

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140532

DNA polymerase of bacteriophage T4 is an autogenous translational repressor

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140532

Mouse p53 blocks SV40 DNA replication in vitro and downregulates T antigen DNA helicase activity

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140532

Mapping functional regions of transcription factor TFIIIA.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140532

Mouse p53 inhibits SV40 origin-dependent DNA replication

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140532

Isolation of a full-length mouse cDNA clone coding for an immunologically distinct p53 molecule

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140532

The murine p53 protein blocks replication of SV40 DNA in vitro by inhibiting the initiation functions of SV40 large T antigen

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140532

Autogenous translational operator recognized by bacteriophage T4 DNA polymerase

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140532

A finger protein structurally similar to TFIIIA that binds exclusively to 5S RNA in Xenopus

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140532

Binding of the Wilms' tumor locus zinc finger protein to the EGR-1 consensus sequence

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140532

Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140532

Mode of interaction of the zinc finger protein TFIIIA with a 5S RNA gene of Xenopus

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140532

A retrovirus-like zinc domain is essential for translational repression of bacteriophage T4 gene 32.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140532

RNA unwinding in translation: assembly of helicase complex intermediates comprising eukaryotic initiation factors eIF-4F and eIF-4B

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140532

In vitro selection of RNA molecules that bind specific ligands

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140532

Regulation of the specific DNA binding function of p53

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140532

p53 is covalently linked to 5.8S rRNA.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140532

RNA-Regulated TRA-1 nuclear export controls sexual fate

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140532

Interaction of a group II intron ribonucleoprotein endonuclease with its DNA target site investigated by DNA footprinting and modification interference

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140532

Characterization of RNA aptamer binding by the Wilms' tumor suppressor protein WT1.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140532

The function of a stem-loop in telomerase RNA is linked to the DNA repair protein Ku.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140532

TRA-1 regulates the cellular distribution of the tra-2 mRNA in C. elegans

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140532

The phenylalanyl-tRNA synthetase specifically binds DNA.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140532

Mechanistic insights into p53-promoted RNA-RNA annealing.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140532

Analysis of the binding of Xenopus transcription factor IIIA to oocyte 5 S rRNA and to the 5 S rRNA gene

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140532

Molecular basis for specific recognition of both RNA and DNA by a zinc finger protein

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140532

p53 overexpression is frequent in European hepatocellular carcinoma and largely independent of the codon 249 hot spot mutation

31 October 2018

1 reference

12 December 2020

p53-dependent repression of CDK4 translation in TGF-beta-induced G1 cell-cycle arrest

1 reference

12 December 2020

A feedback loop coupling 5 S rRNA synthesis to accumulation of a ribosomal protein

1 reference

12 December 2020

A translation repressor element resides in the 3' untranslated region of human p53 mRNA

1 reference

12 December 2020

Mdm2 binding to a conformationally sensitive domain on p53 can be modulated by RNA

1 reference

12 December 2020

p53-dependent apoptosis is regulated by a C-terminally alternatively spliced form of murine p53

1 reference

12 December 2020

In vivo recognition of an RNA aptamer by its transcription factor target

1 reference

12 December 2020

The C-terminus of p53: the more you learn the less you know

1 reference

12 December 2020

Binding stoichiometry of an RNA aptamer and its transcription factor target

1 reference

12 December 2020

Translational, autogenous regulation of gene 32 expression during bacteriophage T4 infection

1 reference

12 December 2020

Association of a 5S gene transcription factor with 5S RNA and altered levels of the factor during cell differentiation

1 reference

12 December 2020

The ternary complex consisting of rat liver ribosomal 5 S RNA, 5.8 S RNA and protein L5

1 reference

12 December 2020

DNA-binding activity of wild-type p53 protein is mediated by the central part of the molecule and controlled by its C terminus

1 reference

12 December 2020

Characterization of the RNA binding properties of Ku protein

1 reference

12 December 2020

RNA and protein catalysis in group II intron splicing and mobility reactions using purified components

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKF512

1 reference

25 July 2017

1 reference

25 July 2017

1 reference