Physical and genetic structure of the maize genome reflects its complex evolutionary history (Q33292018)

25 July 2017

title

Physical and genetic structure of the maize genome reflects its complex evolutionary history (English)

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25 July 2017

13

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24

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John E Bowers

17

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Joachim Messing

object named as

Joachim Messing

22

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Mary L. Schaeffer

19

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Mary Schaeffer

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18

Andrew H Paterson

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Fusheng Wei

1

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Ed Coe

2

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William Nelson

3

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Arvind K Bharti

4

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Fred Engler

5

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Ed Butler

6

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HyeRan Kim

7

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Jose Luis Goicoechea

8

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Mingsheng Chen

9

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Seunghee Lee

10

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Galina Fuks

11

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Hector Sanchez-Villeda

12

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Zhiwei Fang

14

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Michael McMullen

15

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Georgia Davis

16

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Jack Gardiner

20

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Karen Cone

21

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Carol Soderlund

23

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25 July 2017

publication date

1 July 2007

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25 July 2017

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25 July 2017

volume

3

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issue

7

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25 July 2017

page(s)

e123

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Creative Commons CC0 License

25 July 2017

copyright license

start time

20 July 2007

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April 2022 Public Data File from Crossref

copyright status

copyrighted, dedicated to the public domain by copyright holder

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cites work

A BAC pooling strategy combined with PCR-based screenings in a large, highly repetitive genome enables integration of the maize genetic and physical maps

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Linkage relationships of 19 enzyme Loci in maize.

21 June 2018

1 reference

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SyMAP: A system for discovering and viewing syntenic regions of FPC maps

21 June 2018

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Retrotranspositions in orthologous regions of closely related grass species

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1934398

Uneven chromosome contraction and expansion in the maize genome.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1934398

Molecular characterization of Ph1 as a major chromosome pairing locus in polyploid wheat

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1934398

Structure and architecture of the maize genome.

21 June 2018

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The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications

21 June 2018

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Whole-genome validation of high-information-content fingerprinting

21 June 2018

1 reference

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Comparative physical mapping links conservation of microsynteny to chromosome structure and recombination in grasses

21 June 2018

1 reference

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The map-based sequence of the rice genome

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1934398

The maize genetics and genomics database. The community resource for access to diverse maize data

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1934398

The Genomes of Oryza sativa: a history of duplications

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1934398

Gene loss and movement in the maize genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1934398

Close split of sorghum and maize genome progenitors

21 June 2018

1 reference

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Sequence composition and genome organization of maize.

21 June 2018

1 reference

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Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1934398

Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1934398

Structure and evolution of cereal genomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1934398

Locating sequence on FPC maps and selecting a minimal tiling path

21 June 2018

1 reference

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High-throughput fingerprinting of bacterial artificial chromosomes using the snapshot labeling kit and sizing of restriction fragments by capillary electrophoresis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1934398

Comparative DNA sequence analysis of wheat and rice genomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1934398

Characterization of three maize bacterial artificial chromosome libraries toward anchoring of the physical map to the genetic map using high-density bacterial artificial chromosome filter hybridization

21 June 2018

1 reference

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Genetic, physical, and informatics resources for maize. On the road to an integrated map.

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1934398

A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. japonica)

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1934398

An integrated physical and genetic map of the rice genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1934398

Abundance, distribution, and transcriptional activity of repetitive elements in the maize genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1934398

Five-color-based high-information-content fingerprinting of bacterial artificial chromosome clones using type IIS restriction endonucleases

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1934398

Patterns of chromosomal duplication in maize and their implications for comparative maps of the grasses

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1934398

Contigs built with fingerprints, markers, and FPC V4.7.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1934398

DNA sequence evidence for the segmental allotetraploid origin of maize

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1934398

Inferences on the genome structure of progenitor maize through comparative analysis of rice, maize and the domesticated panicoids

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1934398

A maize map standard with sequenced core markers, grass genome reference points and 932 expressed sequence tagged sites (ESTs) in a 1736-locus map.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1934398

Relationships of cereal crops and other grasses

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1934398

Comparative genetics in the grasses

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1934398

High Throughput Fingerprint Analysis of Large-Insert Clones

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1934398

FPC: a system for building contigs from restriction fingerprinted clones

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1934398

Comparative linkage maps of the rice and maize genomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1934398

Cereal Genome Evolution: Grasses, line up and form a circle

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1934398

Image analysis of restriction enzyme fingerprint autoradiograms.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1934398

Duplicated chromosome segments in maize (Zea mays L.): further evidence from hexokinase isozymes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1934398

Duplication and DNA segmental loss in the rice genome: implications for diploidization

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1934398

Evidence that rice and other cereals are ancient aneuploids

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1934398

Cytogenetic studies in the genus Zea : 1. Evidence for five as the basic chromosome number

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17658954

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

New in silico insight into the synteny between rice (Oryza sativa L.) and maize (Zea mays L.) highlights reshuffling and identifies new duplications in the rice genome

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17658954

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Convergent domestication of cereal crops by independent mutations at corresponding genetic Loci

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17658954

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PGEN.0030123

1 reference

25 July 2017

1 reference

25 July 2017

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