Predictive modeling of plant messenger RNA polyadenylation sites. (Q33272650)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17286857 AND SRC:MED&resulttype=core&format=json

25 December 2019

title

Predictive modeling of plant messenger RNA polyadenylation sites (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17286857 AND SRC:MED&resulttype=core&format=json

25 December 2019

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17286857 AND SRC:MED&resulttype=core&format=json

25 December 2019

author name string

Guoli Ji

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17286857 AND SRC:MED&resulttype=core&format=json

25 December 2019

Jianti Zheng

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17286857 AND SRC:MED&resulttype=core&format=json

25 December 2019

Yingjia Shen

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17286857 AND SRC:MED&resulttype=core&format=json

25 December 2019

Ronghan Jiang

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17286857 AND SRC:MED&resulttype=core&format=json

25 December 2019

Yun Lin

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17286857 AND SRC:MED&resulttype=core&format=json

25 December 2019

Johnny C Loke

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17286857 AND SRC:MED&resulttype=core&format=json

25 December 2019

Kimberly M Davis

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17286857 AND SRC:MED&resulttype=core&format=json

25 December 2019

Greg J Reese

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17286857 AND SRC:MED&resulttype=core&format=json

25 December 2019

Qingshun Quinn Li

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17286857 AND SRC:MED&resulttype=core&format=json

25 December 2019

publication date

7 February 2007

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17286857 AND SRC:MED&resulttype=core&format=json

25 December 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17286857 AND SRC:MED&resulttype=core&format=json

25 December 2019

volume

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17286857 AND SRC:MED&resulttype=core&format=json

25 December 2019

page(s)

43

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17286857 AND SRC:MED&resulttype=core&format=json

A large-scale analysis of mRNA polyadenylation of human and mouse genes

25 December 2019

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805453

Analysis of the transcriptional complexity of Arabidopsis thaliana by massively parallel signature sequencing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805453

New perspectives on connecting messenger RNA 3' end formation to transcription

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805453

Probabilistic prediction of Saccharomyces cerevisiae mRNA 3'-processing sites

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805453

GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805453

Formation of mRNA 3' ends in eukaryotes: mechanism, regulation, and interrelationships with other steps in mRNA synthesis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805453

GeneMark.hmm: new solutions for gene finding

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805453

Prediction of complete gene structures in human genomic DNA

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805453

Plant mRNA 3'-end formation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805453

The contribution of AAUAAA and the upstream element UUUGUA to the efficiency of mRNA 3'-end formation in plants

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805453

Design and construction of a versatile system for the expression of foreign genes in plants

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805453

Upstream sequences other than AAUAAA are required for efficient messenger RNA 3'-end formation in plants

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805453

Several distinct types of sequence elements are required for efficient mRNA 3' end formation in a pea rbcS gene

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805453

Prediction of mRNA polyadenylation sites by support vector machine

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805453

Bioinformatic identification of candidate cis-regulatory elements involved in human mRNA polyadenylation

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805453

Compilation of mRNA polyadenylation signals in Arabidopsis revealed a new signal element and potential secondary structures.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805453

An in-silico method for prediction of polyadenylation signals in human sequences.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805453

Two methods for improving performance of an HMM and their application for gene finding

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805453

Extreme heterogeneity of polyadenylation sites in mRNAs encoding chloroplast RNA-binding proteins in Nicotiana plumbaginifolia

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805453

A gateway cloning vector set for high-throughput functional analysis of genes in planta

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1805453

Features of Arabidopsis genes and genome discovered using full-length cDNAs

10 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17286857

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A near-upstream element in a plant polyadenylation signal consists of more than six nucleotides

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17286857

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The Polyadenylation of RNA in Plants

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17286857

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-8-43

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17286857 AND SRC:MED&resulttype=core&format=json

journals/bmcbi/JiZSWJLLDRL07

25 December 2019

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17286857 AND SRC:MED&resulttype=core&format=json

25 December 2019

PubMed publication ID

17286857

1 reference