Analysis of an optimal hidden Markov model for secondary structure prediction (Q33266463)

24 July 2017

title

Analysis of an optimal hidden Markov model for secondary structure prediction (English)

1 reference

24 July 2017

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1 reference

Juliette Martin

1

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24 July 2017

Jean-François Gibrat

series ordinal

2

1 reference

24 July 2017

François Rodolphe

series ordinal

3

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24 July 2017

publication date

13 December 2006

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24 July 2017

published in

BMC Structural Biology

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24 July 2017

volume

6

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24 July 2017

page(s)

25

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Protein secondary structure prediction for a single-sequence using hidden semi-Markov models

24 July 2017

cites work

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21 June 2018

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21 June 2018

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A modified definition of Sov, a segment-based measure for protein secondary structure prediction assessment.

21 June 2018

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21 June 2018

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Assessing the impact of secondary structure and solvent accessibility on protein evolution.

21 June 2018

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21 June 2018

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21 June 2018

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

21 June 2018

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A revised set of potentials for beta-turn formation in proteins

21 June 2018

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21 June 2018

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21 June 2018

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Improved protein secondary structure prediction using support vector machine with a new encoding scheme and an advanced tertiary classifier

31 October 2018

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Best alpha-helical transmembrane protein topology predictions are achieved using hidden Markov models and evolutionary information

31 October 2018

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Amino acid propensities are position-dependent throughout the length of alpha-helices

31 October 2018

1 reference

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Protein secondary structure: entropy, correlations and prediction

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1769381

Protein secondary structure prediction based on an improved support vector machines approach

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1769381

Secondary structure prediction with support vector machines

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1769381

Hidden Markov models that use predicted local structure for fold recognition: alphabets of backbone geometry

31 October 2018

1 reference

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FROST: a filter-based fold recognition method

31 October 2018

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On the significance of alternating patterns of polar and non-polar residues in beta-strands

31 October 2018

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New efficient statistical sequence-dependent structure prediction of short to medium-sized protein loops based on an exhaustive loop classification.

31 October 2018

1 reference

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Dissecting alpha-helices: position-specific analysis of alpha-helices in globular proteins

31 October 2018

1 reference

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Combining protein evolution and secondary structure

31 October 2018

1 reference

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Prediction of protein secondary structure by the hidden Markov model.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1769381

Protein classification by stochastic modeling and optimal filtering of amino-acid sequences.

31 October 2018

1 reference

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Training HMM structure with genetic algorithm for biological sequence analysis

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1769381

Using Evolutionary Trees in Protein Secondary Structure Prediction and Other Comparative Sequence Analyses

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1769381

Position-based sequence weights

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17166267

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Alignments grow, secondary structure prediction improves

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17166267

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Protein secondary structure prediction with semi Markov HMMs

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17166267

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1472-6807-6-25

1 reference

Dimensions Publication ID

24 July 2017

0 references

1 reference

24 July 2017

1 reference