Domain motions in bacteriophage T4 lysozyme: a comparison between molecular dynamics and crystallographic data. (Q32063337)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9593186 AND SRC:MED&resulttype=core&format=json

11 November 2019

title

Domain motions in bacteriophage T4 lysozyme: a comparison between molecular dynamics and crystallographic data (English)

1 reference

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molecular dynamics simulation

11 November 2019

main subject

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1 reference

3

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9593186 AND SRC:MED&resulttype=core&format=json

11 November 2019

Andrea Amadei

4

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11 November 2019

author name string

B L de Groot

1

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11 November 2019

S Hayward

2

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11 November 2019

H J Berendsen

5

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11 November 2019

language of work or name

English

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publication date

1 May 1998

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11 November 2019

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11 November 2019

volume

31

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11 November 2019

issue

2

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11 November 2019

page(s)

116-127

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Structure of Hen Egg-White Lysozyme: A Three-dimensional Fourier Synthesis at 2 Å Resolution

11 November 2019

cites work

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19980501)31:2<116::AID-PROT2>3.0.CO;2-K

Real-space refinement of the structure of hen egg-white lysozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19980501)31:2<116::AID-PROT2>3.0.CO;2-K

The Three Dimensional Structure of the Lysozyme from Bacteriophage T4

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19980501)31:2<116::AID-PROT2>3.0.CO;2-K

A mutant T4 lysozyme displays five different crystal conformations

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19980501)31:2<116::AID-PROT2>3.0.CO;2-K

Protein flexibility and adaptability seen in 25 crystal forms of T4 lysozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19980501)31:2<116::AID-PROT2>3.0.CO;2-K

Protein hinge bending as seen in molecular dynamics simulations of native and M61 mutant T4 lysozymes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19980501)31:2<116::AID-PROT2>3.0.CO;2-K

A covalent enzyme-substrate intermediate with saccharide distortion in a mutant T4 lysozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19980501)31:2<116::AID-PROT2>3.0.CO;2-K

The closed conformation of a highly flexible protein: the structure of E. coli adenylate kinase with bound AMP and AMPPNP

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19980501)31:2<116::AID-PROT2>3.0.CO;2-K

The crystal structure of a triacylglycerol lipase from Pseudomonas cepacia reveals a highly open conformation in the absence of a bound inhibitor

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19980501)31:2<116::AID-PROT2>3.0.CO;2-K

Protein dynamics derived from clusters of crystal structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19980501)31:2<116::AID-PROT2>3.0.CO;2-K

Domain motions in dihydrofolate reductase: a molecular dynamics study

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19980501)31:2<116::AID-PROT2>3.0.CO;2-K

Molecular-dynamics simulation of domain movements in aspartate aminotransferase.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19980501)31:2<116::AID-PROT2>3.0.CO;2-K

Bending of the calmodulin central helix: a theoretical study

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19980501)31:2<116::AID-PROT2>3.0.CO;2-K

Essential dynamics of proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19980501)31:2<116::AID-PROT2>3.0.CO;2-K

A sampling problem in molecular dynamics simulations of macromolecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19980501)31:2<116::AID-PROT2>3.0.CO;2-K

The consistency of large concerted motions in proteins in molecular dynamics simulations

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19980501)31:2<116::AID-PROT2>3.0.CO;2-K

Structure of bacteriophage T4 lysozyme refined at 1.7 A resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19980501)31:2<116::AID-PROT2>3.0.CO;2-K

Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19980501)31:2<116::AID-PROT2>3.0.CO;2-K

Quasi-harmonic method for studying very low frequency modes in proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19980501)31:2<116::AID-PROT2>3.0.CO;2-K

Effect of solvent on collective motions in globular protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19980501)31:2<116::AID-PROT2>3.0.CO;2-K

Collective variable description of native protein dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19980501)31:2<116::AID-PROT2>3.0.CO;2-K

Conservation of solvent-binding sites in 10 crystal forms of T4 lysozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19980501)31:2<116::AID-PROT2>3.0.CO;2-K

Structure of a stabilizing disulfide bridge mutant that closes the active‐site cleft of T4 lysozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19980501)31:2<116::AID-PROT2>3.0.CO;2-K

Structural basis of amino acid alpha helix propensity

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19980501)31:2<116::AID-PROT2>3.0.CO;2-K

Determination of alpha-helix propensity within the context of a folded protein. Sites 44 and 131 in bacteriophage T4 lysozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19980501)31:2<116::AID-PROT2>3.0.CO;2-K

WHAT IF: a molecular modeling and drug design program

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19980501)31:2<116::AID-PROT2>3.0.CO;2-K

An extended sampling of the configurational space of HPr from E. coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19980501)31:2<116::AID-PROT2>3.0.CO;2-K

MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19980501)31:2<116::AID-PROT2>3.0.CO;2-K

Raster3D Version 2.0. A program for photorealistic molecular graphics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19980501)31:2<116::AID-PROT2>3.0.CO;2-K

Molecular dynamics with coupling to an external bath

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19980501)31:2<116::AID-PROT2>3.0.CO;2-K

The hinge-bending mode in lysozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19980501)31:2<116::AID-PROT2>3.0.CO;2-K

The essential dynamics of thermolysin: Confirmation of the hinge-bending motion and comparison of simulations in vacuum and water

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19980501)31:2<116::AID-PROT2>3.0.CO;2-K

Substantial increase of protein stability by multiple disulphide bonds

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19980501)31:2<116::AID-PROT2>3.0.CO;2-K

10.1002/(SICI)1097-0134(19980501)31:2<116::AID-PROT2>3.0.CO;2-K

21 January 2018

Identifiers

DOI

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9593186 AND SRC:MED&resulttype=core&format=json

release_6lbezonbnbbt3efvii7fzzsmia

11 November 2019

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