Stochastic EM-based TFBS motif discovery with MITSU (Q31165989)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24931999 AND SRC:MED&resulttype=core&format=json

20 March 2020

title

Stochastic EM-based TFBS motif discovery with MITSU (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24931999 AND SRC:MED&resulttype=core&format=json

20 March 2020

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expectation–maximization algorithm

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author

Alastair M. Kilpatrick

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24931999 AND SRC:MED&resulttype=core&format=json

20 March 2020

Stuart Aitken

3

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author name string

Bruce Ward

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24931999 AND SRC:MED&resulttype=core&format=json

20 March 2020

Stuart Aitken

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24931999 AND SRC:MED&resulttype=core&format=json

20 March 2020

language of work or name

English

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publication date

1 June 2014

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24931999 AND SRC:MED&resulttype=core&format=json

20 March 2020

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24931999 AND SRC:MED&resulttype=core&format=json

20 March 2020

volume

30

1 reference

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20 March 2020

issue

12

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20 March 2020

page(s)

i310-8

1 reference

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Creative Commons Attribution-NonCommercial 3.0 Unported

20 March 2020

copyright license

start time

3 October 2016

1 reference

April 2023 Public Data File from Crossref

copyright status

copyrighted

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cites work

Functional analysis of transcription factor binding sites in human promoters

1 reference

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Analysis of variation at transcription factor binding sites in Drosophila and humans

21 June 2018

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Classification of human genomic regions based on experimentally determined binding sites of more than 100 transcription-related factors

21 June 2018

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RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units)

21 June 2018

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The value of position-specific priors in motif discovery using MEME.

21 June 2018

1 reference

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Limitations and potentials of current motif discovery algorithms

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4058950

Assessing computational tools for the discovery of transcription factor binding sites

21 June 2018

1 reference

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EcoGene: a genome sequence database for Escherichia coli K-12.

21 June 2018

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Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment

21 June 2018

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Fitting a mixture model by expectation maximization to discover motifs in biopolymers

21 June 2018

1 reference

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Identifying protein-binding sites from unaligned DNA fragments

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4058950

An expectation maximization (EM) algorithm for the identification and characterization of common sites in unaligned biopolymer sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4058950

SEAM: a Stochastic EM-type Algorithm for Motif-finding in biopolymer sequences

21 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTU286

A Monte Carlo EM algorithm for de novo motif discovery in biomolecular sequences

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTU286

MCOIN: a novel heuristic for determining transcription factor binding site motif width

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTU286

21 January 2018

1 reference

https://api.crossref.org/works/10.1093/BIOINFORMATICS/BTU286

Supervised detection of conserved motifs in DNA sequences with cosmo

21 January 2018

1 reference

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Supervised detection of regulatory motifs in DNA sequences

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4058950

10.1093/BIOINFORMATICS/BTU286

31 October 2018

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24931999 AND SRC:MED&resulttype=core&format=json

journals/bioinformatics/KilpatrickWA14

20 March 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24931999 AND SRC:MED&resulttype=core&format=json

20 March 2020

PubMed publication ID

24931999

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24931999 AND SRC:MED&resulttype=core&format=json