ChIP-Seq Data Analysis to Define Transcriptional Regulatory Networks (Q31153870)

29 June 2017

title

ChIP-Seq Data Analysis to Define Transcriptional Regulatory Networks (English)

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29 June 2017

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Giulio Pavesi

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29 June 2017

publication date

10 January 2017

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Advances in biochemical engineering/biotechnology

29 June 2017

published in

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29 June 2017

volume

160

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29 June 2017

page(s)

1-14

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Bioinformatics approaches for genomics and post genomics applications of next-generation sequencing

29 June 2017

cites work

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The impact of next-generation sequencing technology on genetics

21 January 2018

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Transcription regulation and animal diversity

21 January 2018

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Constructing transcriptional regulatory networks

21 January 2018

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Chop it, ChIP it, check it: the current status of chromatin immunoprecipitation

21 January 2018

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ChIP on chip assays: genome-wide analysis of transcription factor binding and histone modifications

21 January 2018

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ChIP-seq: welcome to the new frontier

21 January 2018

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

21 January 2018

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NF-Y coassociates with FOS at promoters, enhancers, repetitive elements, and inactive chromatin regions, and is stereo-positioned with growth-controlling transcription factors

21 January 2018

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Computation for ChIP-seq and RNA-seq studies

21 January 2018

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Using MACS to identify peaks from ChIP-Seq data

21 January 2018

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Model-based analysis of ChIP-Seq (MACS)

21 January 2018

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Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data

21 January 2018

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PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls

21 January 2018

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Architecture of the human regulatory network derived from ENCODE data

21 January 2018

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ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

21 January 2018

1 reference

21 January 2018

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Using Weeder, Pscan, and PscanChIP for the Discovery of Enriched Transcription Factor Binding Site Motifs in Nucleotide Sequences.

21 January 2018

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Motif discovery and transcription factor binding sites before and after the next-generation sequencing era.

21 January 2018

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PscanChIP: Finding over-represented transcription factor-binding site motifs and their correlations in sequences from ChIP-Seq experiments

21 January 2018

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Integrative analysis of 111 reference human epigenomes

21 January 2018

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The histone-like NF-Y is a bifunctional transcription factor

21 January 2018

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Ensembl Genomes 2016: more genomes, more complexity

21 January 2018

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The UCSC Genome Browser database: 2016 update

21 January 2018

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Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities

21 January 2018

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GREAT improves functional interpretation of cis-regulatory regions

21 January 2018

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ChIA-PET tool for comprehensive chromatin interaction analysis with paired-end tag sequencing

21 January 2018

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A statistical model of ChIA-PET data for accurate detection of chromatin 3D interactions

21 January 2018

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An evaluation of 3C-based methods to capture DNA interactions

21 January 2018

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Chromatin Interaction Analysis with Paired-End Tag (ChIA-PET) sequencing technology and application

21 January 2018

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Chromatin connectivity maps reveal dynamic promoter-enhancer long-range associations

21 January 2018

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RNA-Seq gene profiling--a systematic empirical comparison

21 January 2018

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RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays

21 January 2018

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Alternative isoform regulation in human tissue transcriptomes

21 January 2018

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Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage

21 January 2018

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5' end-centered expression profiling using cap-analysis gene expression and next-generation sequencing

21 January 2018

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Revisiting global gene expression analysis

21 January 2018

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Integration of external signaling pathways with the core transcriptional network in embryonic stem cells

21 January 2018

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Distinct transcriptional regulatory modules underlie STAT3's cell type-independent and cell type-specific functions

21 January 2018

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Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors

21 January 2018

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21 January 2018

Lessons from modENCODE.

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Cistrome: an integrative platform for transcriptional regulation studies

21 January 2018

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Cscan: finding common regulators of a set of genes by using a collection of genome-wide ChIP-seq datasets

21 January 2018

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Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool

21 January 2018

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21 January 2018

Identifiers

DOI

10.1007/10_2016_43

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release_s6prqbptzra6dbpy3sk245arjq

29 June 2017

Fatcat ID

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Fatcat

https://api.fatcat.wiki/v0/release/s6prqbptzra6dbpy3sk245arjq

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24 November 2022

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