Workflow for Genome-Wide Determination of Pre-mRNA Splicing Efficiency from Yeast RNA-seq Data (Q31152577)

11 September 2017

Workflow for Genome-Wide Determination of Pre-mRNA Splicing Efficiency from Yeast RNA-seq Data (English)

1 reference

11 September 2017

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1

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9 June 2020

Martina Hálová

2

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9 June 2020

Kateřina Abrhámová

3

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9 June 2020

Jiří Libus

4

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9 June 2020

Petr Folk

5

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9 June 2020

5

Petr Folk

1 reference

11 September 2017

1

Martin Převorovský

1 reference

11 September 2017

Martina Hálová

2

1 reference

11 September 2017

Kateřina Abrhámová

3

1 reference

11 September 2017

Jiří Libus

4

1 reference

11 September 2017

language of work or name

English

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publication date

6 December 2016

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BioMed Research International

11 September 2017

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9 June 2020

volume

2016

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9 June 2020

page(s)

4783841

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Creative Commons Attribution 4.0 International

9 June 2020

copyright license

start time

1 January 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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April 2022 Public Data File from Crossref

cites work

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Structure of a yeast catalytic step I spliceosome at 3.4 Å resolution

21 June 2018

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Novel Intronic RNA Structures Contribute to Maintenance of Phenotype in Saccharomyces cerevisiae

21 June 2018

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Prp40 and early events in splice site definition

21 June 2018

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21 June 2018

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Widespread use of non-productive alternative splice sites in Saccharomyces cerevisiae

21 June 2018

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21 June 2018

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21 June 2018

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Competition between pre-mRNAs for the splicing machinery drives global regulation of splicing

21 June 2018

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RNA splicing regulates the temporal order of TNF-induced gene expression

21 June 2018

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Transcriptome analysis of the parasite Encephalitozoon cuniculi: an in-depth examination of pre-mRNA splicing in a reduced eukaryote

21 June 2018

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Alternative splicing in ascomycetes.

21 June 2018

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Pre-mRNA splicing in disease and therapeutics

21 June 2018

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21 June 2018

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Diverse environmental stresses elicit distinct responses at the level of pre-mRNA processing in yeast

21 June 2018

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Spliceosome Structure and Function

21 June 2018

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21 June 2018

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Integration of a splicing regulatory network within the meiotic gene expression program of Saccharomyces cerevisiae

21 June 2018

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21 June 2018

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The evolutionarily conserved core design of the catalytic activation step of the yeast spliceosome

21 June 2018

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The pathobiology of splicing

21 June 2018

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The Sequence Alignment/Map format and SAMtools

21 June 2018

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Prp45 affects Prp22 partition in spliceosomal complexes and splicing efficiency of non-consensus substrates.

21 June 2018

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Analyzing real-time PCR data by the comparative C(T) method

21 June 2018

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Splicing regulation: from a parts list of regulatory elements to an integrated splicing code

21 June 2018

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Rapid, transcript-specific changes in splicing in response to environmental stress

21 June 2018

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Genomewide analysis of mRNA processing in yeast using splicing-specific microarrays

21 June 2018

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Proteomics analysis reveals stable multiprotein complexes in both fission and budding yeasts containing Myb-related Cdc5p/Cef1p, novel pre-mRNA splicing factors, and snRNAs.

21 June 2018

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Test of intron predictions reveals novel splice sites, alternatively spliced mRNAs and new introns in meiotically regulated genes of yeast

21 June 2018

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The Saccharomyces cerevisiae MER3 gene, encoding a novel helicase-like protein, is required for crossover control in meiosis

21 June 2018

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Intron-exon structures of eukaryotic model organisms

21 June 2018

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Genome-wide bioinformatic and molecular analysis of introns in Saccharomyces cerevisiae

21 June 2018

1 reference

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Mutations within the yeast U4/U6 snRNP protein Prp4 affect a late stage of spliceosome assembly

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168555

Identification of Prp40, a novel essential yeast splicing factor associated with the U1 small nuclear ribonucleoprotein particle

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168555

PRP4: a protein of the yeast U4/U6 small nuclear ribonucleoprotein particle

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168555

PRP4 (RNA4) from Saccharomyces cerevisiae: its gene product is associated with the U4/U6 small nuclear ribonucleoprotein particle

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168555

Meiosis-specific RNA splicing in yeast

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5168555

A handful of intron-containing genes produces the lion's share of yeast mRNA.

21 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1155/2016/4783841

Identification of ten genes that control ribosome formation in yeast

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28050562

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1155/2016/4783841

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28050562 AND SRC:MED&resulttype=core&format=json

release_3pxyr4dxfnhh3m5wcervrlj2bq

9 June 2020

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/3pxyr4dxfnhh3m5wcervrlj2bq

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28050562 AND SRC:MED&resulttype=core&format=json

9 June 2020

PubMed publication ID

28050562

1 reference